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(-) Description

Title :  STRUCTURE OF NATIVE GRANULOVIRUS POLYHEDRIN DETERMINED USING AN X-RAY FREE-ELECTRON LASER
 
Authors :  C. Gati, R. D. Bunker, D. Oberthur, P. Metcalf, C. Henry
Date :  23 Mar 16  (Deposition) - 22 Feb 17  (Release) - 15 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (12x)
Keywords :  Structural Protein, Fel, Native Crystals, Nano Crystallography, Serial Crystallography (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Gati, D. Oberthuer, O. Yefanov, R. D. Bunker, F. Stellato, E. Chiu, S. M. Yeh, A. Aquila, S. Basu, R. Bean, K. R. Beyerlein, S. Botha, S. Boutet, D. P. Deponte, R. B. Doak, R. Fromme, L. Galli, I. Grotjohann D. R. James, C. Kupitz, L. Lomb, M. Messerschmidt, K. Nass, K. Rendek, R. L. Shoeman, D. Wang, U. Weierstall, T. A. White, G. J. Williams, N. A. Zatsepin, P. Fromme, J. C. Spence, K. N. Goldie, J. A. Jehle, P. Metcalf, A. Barty, H. N. Chapman
Atomic Structure Of Granulin Determined From Native Nanocrystalline Granulovirus Using An X-Ray Free-Electron Laser.
Proc. Natl. Acad. Sci. V. 114 2247 2017 U. S. A.
PubMed-ID: 28202732  |  Reference-DOI: 10.1073/PNAS.1609243114

(-) Compounds

Molecule 1 - GRANULIN
    Chains: A
    Organism Common: CPGV
    Organism Scientific: CYDIA POMONELLA GRANULOVIRUS
    Organism Taxid: 28289
    Synonym: MATRIX PROTEIN, GRANULOVIRUS POLYHEDRIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (12x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5G0Z)

(-) Sites  (0, 0)

(no "Site" information available for 5G0Z)

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:135 -A:135

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Phe A:110 -Pro A:111
2Gly A:245 -Pro A:246

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5G0Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5G0Z)

(-) Exons   (0, 0)

(no "Exon" information available for 5G0Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeee..eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeee...eeee....hhhhhhhhhhhhhhhhhh....eeeeeeeeeeeeeee........eeeeeeee.........eee....ee.....eeeeee..................hhhhhhhhh.....eeeeeeeee.....eeeeeeeeeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5g0z A   6 SLRYSRHDGTSCVIDNHHLKSLGAVLNDVRRKKDRIREAEYEPIIDIADQYMVTEDPFRGPGKNVRITLFKEIRRVHPDTMKLVCNWSGKEFLRETWTRFISEEFPITTDQEIMDLWFELQLRPMHPNRCYKFTMQYALGAHPDYVAHDVIRQQDPYYVGPNNIERINLSKKGFAFPLTCLQSVYNDNFERFFDDVLWPYFYRPLVYVGTTSAEIEEIMIEVSLLFKIKEFAPDVPLFTGPAY 248
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5G0Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5G0Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5G0Z)

(-) Gene Ontology  (2, 2)

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  Cis Peptide Bonds
    Gly A:245 - Pro A:246   [ RasMol ]  
    Phe A:110 - Pro A:111   [ RasMol ]  
 
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 Related Entries

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        GRAN_GVCPM | P87577: 5g3x 5mnd

(-) Related Entries Specified in the PDB File

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