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(-) Description

Title :  SFX STRUCTURE OF CYDIA POMONELLA GRANULOVIRUS USING A DOUBLE FLOW-FOCUSING NOZZLE
 
Authors :  D. Oberthuer, H. Chapman, K. Doerner, P. L. Xavier
Date :  13 Dec 16  (Deposition) - 29 Mar 17  (Release) - 29 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.56
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (12x)
Keywords :  Sfx, Granulovirus, In Vivo Crystals, Nanocrystals, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Oberthuer, J. Knoska, M. O. Wiedorn, K. R. Beyerlein, D. A. Bushnell E. G. Kovaleva, M. Heymann, L. Gumprecht, R. A. Kirian, A. Barty, V. Mariani, A. Tolstikova, L. Adriano, S. Awel, M. Barthelmess, K. Dorner, P. L. Xavier, O. Yefanov, D. R. James, G. Nelson, D. Wang, G. Calvey, Y. Chen, A. Schmidt, M. Szczepek, S. Frielingsdorf, O. Lenz E. Snell, P. J. Robinson, B. Sarler, G. Belsak, M. Macek, F. Wilde, A. Aquila, S. Boutet, M. Liang, M. S. Hunter, P. Scheerer, J. D. Lipscomb, U. Weierstall, R. D. Kornberg, J. C. Spence, L. Pollack H. N. Chapman, S. Bajt
Double-Flow Focused Liquid Injector For Efficient Serial Femtosecond Crystallography.
Sci Rep V. 7 44628 2017
PubMed-ID: 28300169  |  Reference-DOI: 10.1038/SREP44628

(-) Compounds

Molecule 1 - GRANULIN
    Chains: A
    Organism Scientific: CYDIA POMONELLA GRANULOSIS VIRUS (ISOLATE MEXICO/1963)
    Organism Taxid: 654905
    Synonym: MATRIX PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (12x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5MND)

(-) Sites  (0, 0)

(no "Site" information available for 5MND)

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:135 -A:135

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Phe A:110 -Pro A:111
2Gly A:245 -Pro A:246

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MND)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MND)

(-) Exons   (0, 0)

(no "Exon" information available for 5MND)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeee..eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeee...eeee....hhhhhhhhhhhhhhhhhh....eeeeeeeeeeeeeee........eeeeeeee.........eee....ee.....eeeee...................hhhhhhhhh.....eeeeeeeee.....eeeeeeeeeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mnd A   6 SLRYSRHDGTSCVIDNHHLKSLGAVLNDVRRKKDRIREAEYEPIIDIADQYMVTEDPFRGPGKNVRITLFKEIRRVHPDTMKLVCNWSGKEFLRETWTRFISEEFPITTDQEIMDLWFELQLRPMHPNRCYKFTMQYALGAHPDYVAHDVIRQQDPYYVGPNNIERINLSKKGFAFPLTCLQSVYNDNFERFFDDVLWPYFYRPLVYVGTTSAEIEEIMIEVSLLFKIKEFAPDVPLFTGPAY 248
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MND)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MND)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MND)

(-) Gene Ontology  (2, 2)

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  Cis Peptide Bonds
    Gly A:245 - Pro A:246   [ RasMol ]  
    Phe A:110 - Pro A:111   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GRAN_GVCPM | P87577: 5g0z 5g3x

(-) Related Entries Specified in the PDB File

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