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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  CRYO-EM STRUCTURE OF YEAST CYTOPLASMIC EXOSOME
 
Authors :  J. J. Liu, C. Y. Niu, Y. Wu, D. Tan, Y. Wang, M. D. Ye, Y. Liu, W. W. Zhao, K. Zh Q. S. Liu, J. B. Dai, X. R. Yang, M. Q. Dong, N. Huang, H. W. Wang
Date :  17 Mar 16  (Deposition) - 15 Jun 16  (Release) - 19 Apr 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  4.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,P
Keywords :  Hydrolase, Rna Decay, Exosome, Rna Quality Control (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Liu, C. Niu, Y. Wu, D. Tan, Y. Wang, M. Ye, Y. Liu, W. Zhao, K. Zhou, Q. Liu, J. Dai, X. Yang, M. Dong, N. Huang, H. Wang
Cryoem Structure Of Yeast Cytoplasmic Exosome Complex.
Cell Res. V. 26 822 2016
PubMed-ID: 27174052  |  Reference-DOI: 10.1038/CR.2016.56

(-) Compounds

Molecule 1 - EXOSOME COMPLEX COMPONENT RRP45
    Chains: A
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 45
 
Molecule 2 - EXOSOME COMPLEX COMPONENT SKI6
    Chains: B
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: EXTRACELLULAR MUTANT PROTEIN 20, RIBOSOMAL RNA-PROCESSING PROTEIN 41, SUPERKILLER PROTEIN 6
 
Molecule 3 - EXOSOME COMPLEX COMPONENT RRP43
    Chains: C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 43
 
Molecule 4 - EXOSOME COMPLEX COMPONENT RRP46
    Chains: D
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 46
 
Molecule 5 - EXOSOME COMPLEX COMPONENT RRP42
    Chains: E
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 42
 
Molecule 6 - EXOSOME COMPLEX COMPONENT MTR3
    Chains: F
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: MRNA TRANSPORT REGULATOR 3
 
Molecule 7 - EXOSOME COMPLEX COMPONENT RRP40
    Chains: G
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 40
 
Molecule 8 - EXOSOME COMPLEX COMPONENT RRP4
    Chains: H
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 4
 
Molecule 9 - EXOSOME COMPLEX COMPONENT CSL4
    Chains: I
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: CEP1 SYNTHETIC LETHAL PROTEIN 4
 
Molecule 10 - EXOSOME COMPLEX EXONUCLEASE DIS3
    Chains: J
    EC Number: 3.1.13.1
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: CHROMOSOME DISJUNCTION PROTEIN 3, RIBOSOMAL RNA-PROCESSING PROTEIN 44
 
Molecule 11 - SUPERKILLER PROTEIN 7
    Chains: P
    Fragment: N TERMINAL FRAGMENT
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: CYTOPLASMIC EXOSOME COMPONENT SKI7

 Structural Features

(-) Chains, Units

  1234567891011
Asymmetric/Biological Unit : ABCDEFGHIJP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5G06)

(-) Sites  (0, 0)

(no "Site" information available for 5G06)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1I:3 -I:66
2J:52 -J:55

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Gly B:55 -Pro B:56
2Gly C:263 -Arg C:264
3Gly D:32 -Pro D:33
4Ser E:224 -Pro E:225
5Gly F:79 -Pro F:80
6Ala J:81 -Pro J:82
7Ser P:26 -Gln P:27

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5G06)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5G06)

(-) Exons   (0, 0)

(no "Exon" information available for 5G06)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:302
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhh..............eeeee......eeeee..eeeeeeeeeeee..........eeeee.................hhhhhhhhhhhhhhhh......hhh.eee...eeeeeeeeeeeee...hhhhhhhhhhhhhhhhhee..eeee..eeee........ee.......eeeeeeee...hhhhhhh......eeee..hhhhhhhh.eeeeeee....eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5g06 A    2 AKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQILQLLKEDSEKRNKYAAMLTSENAR  303
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301  


Chain B from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......................eeeee........eeeeeee..eeeeeeeeeee...hhhhh.....eeeeeeee...............hhhhhhhhhhhhhhhhhhh........eeeeeeeeee...hhhhhhhhhhhhhhhhhh......eeeeeeeee..eeee..hhhhhh...eeeeeee.....eeeeee...ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5g06 B    3 RLEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAMSTVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQKRVSN  242
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242


Chain C from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhh...............eeee...hhhhh...........eeeeeee..eeeeeeeee..ee...hhhh......ee..........hhhhhhhhhhhhhhhhhhh...hhhh....eeeee.....eeee.......ee..eeeeeeee.....hhhhhhhhhhhhhh..eeeeeee..hhhheee...........eee....eeeeeeee.........eeeeeeee..........eeee...hhhhhhhh.eeeeeee.....eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5g06 C    7 LETIEIHPITFPPEVLARISPELSLQRHLSLGIRPCLRKYEEFRDVAIENNTLSRYADAGNIDTKNNILGSNVLKSGKTIVITSITGGIIEEEDIIANYASVYPVVEVERGRVGACTDEEMTISQKLHDSILHSRILPKKALKVKAGVRSANEDGTFSVLYPDEKRKWSYVLYAKIVVLSRTGPVFDLCWNSLMYALQSVKLPRAFIDERASDLRMTIRTRGRSATIRETYEIICDQTKSVPLMINAKNIAFASNYGIVELDPECQLNTVLIADLDTEAEETSIHSTISILAAPSGNYKQLTLMGGGAKITPEMIKRSLLLSRVRADDLSTRFNI  394
                                    16        26        36        46        56        66        76        86        96 ||    128       138       148       158       168       178       188   ||  211       221       231       241       251       261       271       281       291       301      |329       339       349       359       369       379       389     
                                                                                                                      98|                                                                    192|                                                                                                   308|                                                                   
                                                                                                                      121                                                                     206                                                                                                    327                                                                   


Chain D from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......eeeeeee..eeeeeeeeeee..hhhhh.....eeeeeee.......hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee........hhhhhhhhhhhhhhhhhhhh.....eeeeeeeeee....eeee..hhhhhhheeeeeeeeeeee....eeeeeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5g06 D    1 MSVQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTREKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVDAGIALNSMCASIPIAIIKDTSDIIVDPTAEQLKISLSVHTLALEFVNGGKVVKNVLLLDSNGDFNEDQLFSLLELGEQKCQELVTNIRRIIQDNISPRLVV  223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220   


Chain E from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh................eeeee.......eeeeee.....eeeeeeeeeeee.......eeeeeee......hhhhhhhhhhhhhhh...........eee..eeeeeeeeeeeee....hhhhhhhhhhhhhh..eeeee..............eeeeeeee......eeeeeeee..eeee..hhhhhh...eeeeeee....eeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5g06 E    1 MSLSVAEKSYLYDSLASTPSIRPDGRLPHQFRPIEIFTDFLPSSNGSSRIIASDGSECIVSIKSKVVDHHVENELLQVDVDIAGQRDDALVVETITSLLNKVLKSGSGVDSSKLQLTKKYSFKIFVDVLVISSHSHPISLISFAIYSALNSTYLPKLISAFDDLEVEELPTFHDYDMVKLDINPPLVFILAVVGNNMLLDPAANESEVANNGLIISWSNGKITSPIRSVALNDSNVKSFKPHLLKQGLAMVEKYAPDVVRSLENL  265
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260     


Chain F from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeee.......eeeeeeee...eeeeeeeeeeeee..........eeeeeee.......hhhhhhhhhhhhhhhhhhhh........eeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhh.......eeeee..eeeeee....eeeeeee......hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5g06 F    4 QDRRRLLGPAAAKPMAFSSEQELSLHTGFIENCNGSALVEARSLGHQTSLISAVYGPRSIRGSFTSQGTISIQLKNGLLEKYNTNELKEVSSFLMGIFNSVVNLSRYPKSGIDIFVYLTYDKDLTSQISSLIPHCITSITLALADAGIELVDMAGAGEANGTVVSFIKNGEEIVGFWKDDGDDEDLLECLDRCKEQYNRYRDLMISCLMNQ  248
                                    13       |43        53        63        73        83        93       103       113       123       133       143    || 167       177       187       197       207       217       227       237       247 
                                            21|                                                                                                       148|                                                                                     
                                             42                                                                                                        163                                                                                     


Chain G from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                             
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...................eee......eee...eeeee..........eeee............eeeeeeeee...eeeee.......eeee...................eeeeeeee......eeee..................eeee.hhhhhhhhhhh...hhhhhhhhhh..eeee....eeeee..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5g06 G    1 MSTFIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAKGKSGVQTAYIDYSSKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEILT  236
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230      


Chain H from PDB  Type:PROTEIN  Length:293
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee................................ee..ee.....eeeeee..eeeeee...........eeeeeeeee...eeeee......eeee.hhh.............hhhhhhhhh....eeeeeeeee.....eeee...........eeeee.............eee...eeeee....eeeeee.hhhhh..................hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhh.hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5g06 H    2 SEVITITKRNGAFQNSDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNGYIWLRKTSQMDLARDESSWQIYSDENDPSISNNIRQAICRYANVIKALAFCEIGITQQRIVSAYEASMVYSNVGELIEKNVMESIGSDILTAEKMRGN  357
                                    11    ||  54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244|      284       294       304       314       324       334       344       354   
                                         16|                                                                                                                                                                                               244|                                                                                  
                                          50                                                                                                                                                                                                275                                                                                  


Chain I from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........ee....eeee.eeeeee..eeeeeeeee...eeeeeeee..eeeeeeee...eeeeee........eeeeeeee.............eeeeeeeee...eeeeeeeee....................eeeee.hhh........hhhhh.....eeeeeeee.......eee............hhhhh.....eee..eee......eee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5g06 I    1 MACNFQFPEIAYPGKLICPQYGTENKDGEDIIFNYVPGPGTKLIQYEHNGRTLEAITATLVGTVRCEEEKTRRTVKNILVSVLPNDFANNLPKEGDIVLTRVTRLSLQRANVEILAVEDKAATFSVSQASSDLGETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVRAQVLSLGDGTNYYLTTARNDLGVVFARAANGAGGLMYATDWQMMTSPVTGATEKRKCAKP  291
                                    10        20        30        40        50        60        70|      108   ||  131       141       151       161|      194       204       214       224       234       244       254       264       274       284       
                                                                                                70|          112|                                161|                                                                                                          
                                                                                                 99           126                                 185                                                                                                          


Chain J from PDB  Type:PROTEIN  Length:993
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeeeeeeeee......eeeeeeeeee...........hhhhhh..................ee....eeeeeeehhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhhhhhhh.....eeeee................hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhh.....eeeehhhhhhhh..................................hhhhhhhhhhh...eeeeeee......eeeee.......eeeehhhhhh......eeeeee.............................................hhhhhhhhhhhhhhhh.......eeeeeeeee.....eeeee............eeeeeee.......eeeee.hhhhhhheeeeeeeee........eeeeeeeeee..hhhhhhhhhhhhh.......hhhhhhh.................hhhhhhhhhhhhee.....eeeee........eeeeeee.....eeeeeeee.........hhhhhhhhhhh..ee...eee...hhhhhhh.......eeeeeeeeeeee.....eeeeeeeeeeeeeeeeeehhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhhhh......hhhhhhhhhhh.......hhhhhhhhhhhhhh...eeee....hhhhh..................hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeee....eeee......eeeehhhhh.......eee....eeee........eeee...eeeeeeeeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5g06 J    9 RRKRLADGLSVTQKVFVRSRNGGATKIVREHYLRSDIPCLSRSCTKCPQIVVPDAQNELPKFILSDSPLELSAPIGKHYVVLDTNVVLQAIDLLENPNCFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDHKRFIVFHNEFSEHTFVERLPNETINDRNNRAIRKTCQWYSEHLKPYDINVVLVTNDRLNREAATKEVESNIITKSLVQYIELLPNADDIRDSIPQMDSFDKDLERDTFSDFTFPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKAPSSIVLDSEHFDVNDNPDIEAGDDDDNNESSSNTTVISDKQRRLLAKDAMIAQRSKKIQPTAKVVYIQRRSWRQYVGQLAPSSVDPQSSSTQNVFVILMDKCLPKVRIRTRRAAELLDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPITSKRKAELLLK 1001
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918       928       938       948       958       968       978       988       998   


Chain P from PDB  Type:PROTEIN  Length:95
                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh..........hhhhhhh...............hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                5g06 P    1 TDDFAFTNFIIKDKKNSLSTSIPLSSQNSSFLSLKKHNNELLGIFVPCNLPKTTRKVAIENFNRPSPDDIIQSAQLNAFNEKLENLNIKSVPKAE   95
                                    10        20        30        40        50        60        70        80        90
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5G06)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5G06)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5G06)

(-) Gene Ontology  (55, 267)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 5g06)
 
  Sites
(no "Sites" information available for 5g06)
 
  Cis Peptide Bonds
    Ala J:81 - Pro J:82   [ RasMol ]  
    Gly B:55 - Pro B:56   [ RasMol ]  
    Gly C:263 - Arg C:264   [ RasMol ]  
    Gly D:32 - Pro D:33   [ RasMol ]  
    Gly F:79 - Pro F:80   [ RasMol ]  
    Ser E:224 - Pro E:225   [ RasMol ]  
    Ser P:26 - Gln P:27   [ RasMol ]  
 

(-) Still Images

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[ Asym./Biol. Unit PNG format ](automatic orientation, automatically generated)
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  5g06
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  CSL4_YEAST | P53859
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  RRP40_YEAST | Q08285
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  RRP41_YEAST | P46948
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  3.1.13.1
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  SKI7_YEAST | Q08491
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CSL4_YEAST | P53859: 4ifd 4oo1 5c0w 5c0x 5jea 5k36
        MTR3_YEAST | P48240: 4ifd 4oo1 5c0w 5c0x 5jea 5k36
        RRP40_YEAST | Q08285: 2ja9 4ifd 4oo1 5c0w 5c0x 5jea 5k36
        RRP41_YEAST | P46948: 2wp8 4ifd 4oo1 5c0w 5c0x 5jea 5k36
        RRP42_YEAST | Q12277: 4ifd 4oo1 5c0w 5c0x 5jea 5k36
        RRP43_YEAST | P25359: 4ifd 4oo1 5c0w 5c0x 5jea 5k36
        RRP44_YEAST | Q08162: 2vnu 2wp8 4ifd 5c0w 5c0x 5jea 5k36
        RRP45_YEAST | Q05636: 2wp8 4ifd 4oo1 5c0w 5c0x 5jea 5k36
        RRP46_YEAST | P53256: 4ifd 4oo1 5c0w 5c0x 5jea 5k36
        RRP4_YEAST | P38792: 4ifd 4oo1 5c0w 5c0x 5jea 5k36
        SKI7_YEAST | Q08491: 4zkd 4zke 5jea

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5G06)