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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF AN ELEVEN COMPONENT NUCLEAR RNA EXOSOME COMPLEX BOUND TO RNA
 
Authors :  C. D. Lima, J. C. Zinder
Date :  19 May 16  (Deposition) - 02 Nov 16  (Release) - 07 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M
Keywords :  Exoribonuclease, Complex, Rna, Structural Protein, Hydrolase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. C. Zinder, E. V. Wasmuth, C. D. Lima
Nuclear Rna Exosome At 3. 1 Angstrom Reveals Substrate Specificities, Rna Paths, And Allosteric Inhibition Of Rrp44/Dis3.
Mol. Cell V. 64 734 2016
PubMed-ID: 27818140  |  Reference-DOI: 10.1016/J.MOLCEL.2016.09.038

(-) Compounds

Molecule 1 - EXOSOME COMPLEX COMPONENT RRP45
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSFDUET
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RRP45, YDR280W, D9954.1
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 45
 
Molecule 2 - EXOSOME COMPLEX COMPONENT SKI6
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSFDUET
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SKI6, ECM20, RRP41, YGR195W, G7587
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: EXTRACELLULAR MUTANT PROTEIN 20,RIBOSOMAL RNA-PROCESSING PROTEIN 41,SUPERKILLER PROTEIN 6
 
Molecule 3 - EXOSOME COMPLEX COMPONENT RRP43
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSFDUET
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RRP43, YCR035C, YCR35C, YCR522
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 43
 
Molecule 4 - EXOSOME COMPLEX COMPONENT RRP46
    Chains: D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSFDUET
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RRP46, YGR095C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 46
 
Molecule 5 - EXOSOME COMPLEX COMPONENT RRP42
    Chains: E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSFDUET
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RRP42, YDL111C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 42
 
Molecule 6 - EXOSOME COMPLEX COMPONENT MTR3
    Chains: F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSFDUET
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MTR3, YGR158C, G6676
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: MRNA TRANSPORT REGULATOR 3
 
Molecule 7 - EXOSOME COMPLEX COMPONENT RRP40
    Chains: G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTOPO-SMT3
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RRP40, YOL142W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 40
 
Molecule 8 - EXOSOME COMPLEX COMPONENT RRP4
    Chains: H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTOPO-SMT3
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RRP4, YHR069C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 4
 
Molecule 9 - EXOSOME COMPLEX COMPONENT CSL4
    Chains: I
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTOPO-SMT3
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CSL4, SKI4, YNL232W, N1154
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: CEP1 SYNTHETIC LETHAL PROTEIN 4
 
Molecule 10 - EXOSOME COMPLEX EXONUCLEASE RRP6
    Chains: J
    EC Number: 3.1.13.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTOPO-SMT3
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RRP6, UNC733, YOR001W
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 6
 
Molecule 11 - EXOSOME COMPLEX EXONUCLEASE DIS3
    Chains: K
    EC Number: 3.1.13.-, 3.1.26.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTOPO-SMT3
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: DIS3, RRP44, YOL021C, O2197
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: CHROMOSOME DISJUNCTION PROTEIN 3,RIBOSOMAL RNA-PROCESSING PROTEIN 44
 
Molecule 12 - RNA (17-MER)
    Chains: M, L
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: ORIGINAL COMPOUND USED FOR CRYSTALLIZATION IS 3'AAAAUUUUAUUUAUUAU5'-1,1'-(OXYBIS(ETHANE-2,1-DIYL))BIS(4-BUTYL-1H-1, 2,3-TRIAZOLE)-5'UAUUAUUUAUUUUAAAA3'
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910111213
Asymmetric/Biological Unit : ABCDEFGHIJKLM

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 18)

Asymmetric/Biological Unit (3, 18)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2SO410Ligand/IonSULFATE ION
3ZN1Ligand/IonZINC ION

(-) Sites  (0, 0)

(no "Site" information available for 5K36)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K36)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Gly B:55 -Pro B:56
2Gly D:32 -Pro D:33
3Ser E:224 -Pro E:225
4Gly F:79 -Pro F:80
5Arg H:150 -Lys H:151
6Arg J:352 -Pro J:353
7Ala K:81 -Pro K:82

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K36)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K36)

(-) Exons   (0, 0)

(no "Exon" information available for 5K36)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                   
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh..............eeeee.....eeeeee..eeeeeeeeeeee..........eeeee...hhhhh.........hhhhhhhhhhhhhhhh......hhh.eee...eeeeeeeeeeeee...hhhhhhhhhhhhhhhhhee..eeee..eeee........ee.......eeeeeeee....eeee..hhhhhhh..eeeeeee....eeeeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5k36 A    3 KDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPVNEREPVPLGILHIPICVTFSFFNPSEISIIDATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQILQLLKEDSEKRNKYAAMLTSENARE  304
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202||     224       234       244       254       264       274       284       294       304
                                                                                                                                                                                                                                  203|                                                                                        
                                                                                                                                                                                                                                   216                                                                                        


Chain B from PDB  Type:PROTEIN  Length:239
                                                                                                                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................eeeee........eeeeeee..eeeeeeeeeee...hhhhh.....eeeeeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee...hhhhhhhhhhhhhhhhh.......eeeeeeeee..eeee..hhhhhh..eeeeeeee.....eeeeee...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5k36 B    1 MSRLEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAMSTVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQKR  239
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230         


Chain C from PDB  Type:PROTEIN  Length:340
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhh............ee.ee......................eeeeeee..eeeeeeeeeeeeee...hhhhhhhhhhhhhhhhhh..hhhh.ee..eeeeee........hhhhhhhhhhhhhhhhhh..ee.hhhh...eeee.......eee......eeeeeeeeeeeee.....hhhhhhhhhhhhhh..eeeeeee......eeeeeeeee.........eeeeeeeee........hhhhh..eeeee..hhhhhhhhh..eeeeeee...eeeeeeee......hhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5k36 C   10 IEIHPITFPPEVLARISPELSLQRHLSLGIRPCLRKYEEFRDVAIENNTLSRYADAGNIDTKNNILGSNVLKSGKTIVITSITGGIIEETSAAIKDLDDFGEEELFEVTKEEDIIANYASVYPVVEVERGRVGACTDEEMTISQKLHDSILHSRILPKKALKVKAGVRSANEDGTFSVLYPKMKRKWSYVLYAKIVVLSRTGPVFDLCWNSLMYALQSVKLPRAFIDETYEIICDQTKSVPLMINAKNIAFASNYGIVELDPECQVDIDMDKLNTVLIADLDTEAEETSIHSTISILAAPSGNYKQLTLVGGGAKITPEMIKRSLLLSRVRADDLSTRFN  393
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189||     212       222       232       242       272       282       292       302    || 323       333       343       353       363       373       383       393
                                                                                                                                                                                                              190|                                           250|                                 307|                                                                          
                                                                                                                                                                                                               204                                            271                                  319                                                                          


Chain D from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.......eeeeeee..eeeeeeeeeee...........eeeeeeee......hhhhhhhhhhhhhhhh...hhhhh..eeeeeeeeeee........hhhhhhhhhhhhhhhhhhhh.....eeeeeeeeee.....eee..hhhhhh.eeeeeeeeeeeehhhheeeeeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5k36 D    2 SVQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTREKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVDAGIALNSMCASIPIAIIKDTSDIIVDPTAEQLKISLSVHTLALEFVNGGKVVKNVLLLDSNGDFNEDQLFSLLELGEQKCQELVTNIRRIIQDNISPRLV  222
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221 


Chain E from PDB  Type:PROTEIN  Length:259
                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh.................eeeee.......eeeeee.....eeeeeeeeeeee.......eeeeeee......hhhhhhhhhhhhhhh......hhhhhh....eeeeeeeeeeeee....hhhhhhhhhhhhhh..eeeeee......eeeeeeeee......eeeeeeee..eeee....hhhhh..eeeeeeee..eeeeeee............hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5k36 E    1 MSLSVAEKSYLYDSLASTPSIRPDGRLPHQFRPIEIFTDFLPSSNGSSRIIASDGSECIVSIKSKVVDHHVENELLQVDVDIAGQRDDALVVETITSLLNKVLKSGSGVDSSKLQLTKKYSFKIFVDVLVISSHSHPVSLISFAIYSALNSTYLPKLISVEELPTFHDYDMVKLDINPPLVFILAVVGNNMLLDPAANESEVANNGLIISWSNGKITSPIRSVALNDSNVKSFKPHLLKQGLAMVEKYAPDVVRSLENL  265
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       166       176       186       196       206       216       226       236       246       256         
                                                                                                                                                                                        159|                                                                                                   
                                                                                                                                                                                         166                                                                                                   


Chain F from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee............eeeee........eeeeeeeee..eeeeeeeeeeeeee.........eeeeeeee......hhhhhhhhhhhhhhhhh...hhhhh..eeeeeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhh........eeeee..eeeeee....eeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5k36 F    8 RLLGPAAAKPMAFSNTTTHSEQELSLHTGFIENCNGSALVEARSLGHQTSLITAVYGPRSIRGSFTSQGTISIQLKNGLLEKYNTNELKEVSSFLMGIFNSVVNLSRYPKSGIDIFVYLTYDKDLTNNPSQISSLIPHCITSITLALADAGIELVDMAGAGEANGTVVSFIKNGEEIVGFWKDDGDDEDLLECLDRCKEQYNRYRDLMISCLMNQ  248
                                    17        42        52        62        72        82        92       102       112       122       132       142       163       173       183       193       203       213       223       233       243     
                                             26|                                                                                                          151|                                                                                     
                                              42                                                                                                           163                                                                                     


Chain G from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                         
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..............ee...eee......eee...eeeee.....eeeeee..........eeeeeeeeee...eeeee.......eeee...................eeeeeeee.......eee............ee....eeee.hhhhhhhhhh....hhhhhhhh...eeeeee...eeeeee.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5k36 G    1 MSTFIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSAGVQTAYIDYSSKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEILT  236
                                    10        20        30        40     || 54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234  
                                                                        46|                                                                                                                                                                                         
                                                                         51                                                                                                                                                                                         


Chain H from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.......ee....eee.....ee...eeee..eeee...eeeeee..eeeeee...........eeeeeeeeee..eeeee......eeee.hhh............hhhhhhh.......eeeeeeeee.....eeee...........eeeee.hhhhh......eeee...eeeee....eeeeee.hhhhhhhh................hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5k36 H    4 VITITKRNGAFQNSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNGYIWLRKTSQMDLARDTPSSWQIYSDENDPSISNNIRQAICRYANVIKALAFCEIGITQQRIVSAYEASMVYSNVGELIEKNVMESIGSDILTAEKMRG  356
                                    13  ||    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       277       287       297       307       317       327       337       347         
                                       16|                                                                                                                                                                                               246|                                                                                
                                        52                                                                                                                                                                                                276                                                                                


Chain I from PDB  Type:PROTEIN  Length:224
                                                                                                                                                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee....eeee.eeeeee..eeeeeeeee...eeeee........eeeee...eeeeeee...eeeeeeee.hhhhhhhh.hhhhhhhhh......eeeeeeeee...eeeeeeeeee...ee........eeeeee.hhh........hhhhh.....eeeeeeeee.....eeee......eeeeee.......eeeeee..eee......ee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5k36 I    6 QFPEIAYPGKLICPQYGTENKDGEDIIFNYVPGPGTKLIQYEHNGRTLEAITATLVGTVRCEEEVKNILVSVLPGTEKGRKTNKYANNDFANNLPKEGDIVLTRVTRLSLQRANVEILAVEDATFSVSSDLGETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVRAQVLSLGDGTNYYLTTARNDLGVVFARAANGAGGLMYATDWQMMTSPVTGATEKRKCAK  290
                                    15        25        35        45        55        65   ||  108       118       128       138       148       158 ||    196       206       216       226       236       246       256       266       276       286    
                                                                                          69|                                                      160|  191|                                                                                               
                                                                                          103                                                       186   195                                                                                               


Chain J from PDB  Type:PROTEIN  Length:467
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh........................hhhhh...............hhhhhhhh..hhhhhh...............eee.hhhhhhhhhhhhh...eeeeeeeee.......eeeeeeee....eeee.......hhhhhhhhhh....eeee....hhhhhhhhhh......eeehhhhhhhhh....hhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.ee.............ee........hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh..hhhhhhhhhhhhhhhh................eeee.....eee.hhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5k36 J  128 MVEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVNLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNIKNTNADGILLETISVPQIRDVMERFSVLCNSNTNSSILLGKILPREEHDIAYSKDGLPNKVKTEDIRIRAQNFKSALANLEDII  617
                                   137       147       157       167    || 179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509      |531       541       551    || 570       580       590       600       610       
                                                                      172|                                                                                                                                                                                                                                                                                                                                                  516|                        556|                                                   
                                                                       175                                                                                                                                                                                                                                                                                                                                                   529                         566                                                   


Chain K from PDB  Type:PROTEIN  Length:955
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.....eeeeeeeeeee..eeeeeeeeeee............................................eeeeehhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhhhhhhhhh.....eeeee................hhhhhhhhhhhhhhhhhhhhh.....eeeee..hhhhhhhhhhhhhhh.eeehhhhhhhh..hhhhhhhhh.........hhhhhhhhhhh..eeeeeeee......eeee........eeeehhhhhh......eeeeee.hhhhh.........................hhhhhhhhhhhhhhhhhh......eeeeeeee....eeeeee.hhhh.......eeeeeee......eeeeee........eeeeeeeee........eeeeeeeeee..hhhhhhhhhhhh........hhhhh.....hhhhh.......hhhhhhhhhhhhhhee.....eeeee........eeeeeee.....eeeeeeee.hhhh....hhhhhhhhhhh..ee...eee...hhhhhh.........eeeeeeee............eeeeeeeeeeeeeehhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh........eeeee...eeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhh.........hhhhhhhhhhh......hhhhhhhhhhhhh....eeeee.hhhhhhhhh..................hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee..eeeeee....eeeeee......hhhhheee....eeee........eeee...eeeeeee.....ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5k36 K    8 PRRKRLADGLSVTQKVFVRSRNGGATKIVREHYLRSDIPCLSRSCTKCPQIVVPDAQNELPKFILSDSPLELSAPIGKHYVVLDTNVVLQAIDLLENPNCFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDHKRFIVFHNEFSEHTFVERLPNETINDRNNRAIRKTCQWYSEHLKPYDINVVLVTNDRLNREAATKEVESNIITKSLVQYIELLPNADDIRDSIPQFTFPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKAPSSIVLDSEHFDVNDNPDIEAVISDKQRRLLAKDAMIAQRSKKIQPTAKVVYIQRRSWRQYVGQLAPSSVDPQSSSTQNVFVILMDKCLPKVRIRTRRAAELLDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDAELLLK 1001
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237|      262       272       282       292       302       312       322       332       342      |366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706|      719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       996     
                                                                                                                                                                                                                                                               237|                                                                                             349|                                                                                                                                                                                                                                                                                                                                                   706|                                                                                                                                                                                                                                                                                   988|     
                                                                                                                                                                                                                                                                253                                                                                              364                                                                                                                                                                                                                                                                                                                                                    710                                                                                                                                                                                                                                                                                    996     


Chain L from PDB  Type:RNA  Length:17
                                                  
                5k36 L    1 UAUUAUUUAUUUUAAAA   17
                                    10       


Chain M from PDB  Type:RNA  Length:7
                                        
                5k36 M   11 UUUAAAA   17
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K36)

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(-) Gene Ontology  (58, 284)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CSL4_YEAST | P53859: 4ifd 4oo1 5c0w 5c0x 5g06 5jea
        MTR3_YEAST | P48240: 4ifd 4oo1 5c0w 5c0x 5g06 5jea
        RRP40_YEAST | Q08285: 2ja9 4ifd 4oo1 5c0w 5c0x 5g06 5jea
        RRP41_YEAST | P46948: 2wp8 4ifd 4oo1 5c0w 5c0x 5g06 5jea
        RRP42_YEAST | Q12277: 4ifd 4oo1 5c0w 5c0x 5g06 5jea
        RRP43_YEAST | P25359: 4ifd 4oo1 5c0w 5c0x 5g06 5jea
        RRP44_YEAST | Q08162: 2vnu 2wp8 4ifd 5c0w 5c0x 5g06 5jea
        RRP45_YEAST | Q05636: 2wp8 4ifd 4oo1 5c0w 5c0x 5g06 5jea
        RRP46_YEAST | P53256: 4ifd 4oo1 5c0w 5c0x 5g06 5jea
        RRP4_YEAST | P38792: 4ifd 4oo1 5c0w 5c0x 5g06 5jea
        RRP6_YEAST | Q12149: 1m0y 2hbj 2hbk 2hbl 2hbm 4ifd 4oo1 4wfc 4wfd 5c0w 5c0x 5c0y

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5K36)