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(-) Description

Title :  STRUCTURE OF AN RRP6-RNA EXOSOME COMPLEX BOUND TO POLY(A) RNA
 
Authors :  C. D. Lima, E. V. Wasmuth
Date :  29 Jan 14  (Deposition) - 02 Jul 14  (Release) - 27 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,S
Keywords :  Rna Exosome Complex, Rna Processing/Decay, Nucleus, Rna Binding Protein-Rna Complex, Hydrolase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. V. Wasmuth, K. Januszyk, C. D. Lima
Structure Of An Rrp6-Rna Exosome Complex Bound To Poly(A) Rna.
Nature V. 511 435 2014
PubMed-ID: 25043052  |  Reference-DOI: 10.1038/NATURE13406

(-) Compounds

Molecule 1 - EXOSOME COMPLEX COMPONENT RRP45
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSMT3 PRSFDUE1-1
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: D9954.1, RRP45, YDR280W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: S288C
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 45
 
Molecule 2 - EXOSOME COMPLEX COMPONENT SKI6
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSMT3 PRSFDUE1-1
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ECM20, G7587, RRP41, SKI6, YGR195W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: S288C
    Synonym: EXTRACELLULAR MUTANT PROTEIN 20, RIBOSOMAL RNA-PROCESSING PROTEIN 41, SUPERKILLER PROTEIN 6
 
Molecule 3 - EXOSOME COMPLEX COMPONENT RRP43
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSMT3 PRSFDUE1-1
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RRP43, YCR035C, YCR35C, YCR522
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: S288C
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 43
 
Molecule 4 - EXOSOME COMPLEX COMPONENT RRP46
    Chains: D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSMT3 PRSFDUE1-1
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RRP46, YGR095C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: S288C
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 46
 
Molecule 5 - EXOSOME COMPLEX COMPONENT RRP42
    Chains: E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSMT3 PRSFDUE1-1
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RRP42, YDL111C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: S288C
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 42
 
Molecule 6 - EXOSOME COMPLEX COMPONENT MTR3
    Chains: F
    EC Number: 3.1.13.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSMT3 PRSFDUE1-1
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: G6676, MTR3, YGR158C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: S288C
    Synonym: MRNA TRANSPORT REGULATOR 3
 
Molecule 7 - EXOSOME COMPLEX COMPONENT RRP40
    Chains: G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSMT3 PRSFDUE1-1
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RRP40, YOL142W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: S288C
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 40
 
Molecule 8 - EXOSOME COMPLEX COMPONENT RRP4
    Chains: H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSMT3 PRSFDUE1-1
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RRP4, YHR069C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: S288C
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 4
 
Molecule 9 - EXOSOME COMPLEX COMPONENT CSL4
    Chains: I
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSMT3 PRSFDUE1-1
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CSL4, N1154, SKI4, YNL232W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: S288C
    Synonym: CEP1 SYNTHETIC LETHAL PROTEIN 4
 
Molecule 10 - EXOSOME COMPLEX EXONUCLEASE RRP6
    Chains: J
    EC Number: 3.1.13.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSMT3 PRSFDUE1-1
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RRP6, UNC733, YOR001W
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: S288C
    Synonym: RIBOSOMAL RNA-PROCESSING PROTEIN 6
 
Molecule 11 - POLY A RNA
    Chains: S
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234567891011
Asymmetric/Biological Unit : ABCDEFGHIJS

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
1MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2MG2Ligand/IonMAGNESIUM ION
3MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4PO42Ligand/IonPHOSPHATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP E:81 , ILE E:82 , GLN E:85 , ASP E:87BINDING SITE FOR RESIDUE MG E 301
2AC2SOFTWARESER E:9 , ASN E:235BINDING SITE FOR RESIDUE MPD E 302
3AC3SOFTWARELYS A:13 , GLY G:153 , CYS G:198BINDING SITE FOR RESIDUE MES G 301
4AC4SOFTWAREARG I:150 , PO4 S:102BINDING SITE FOR RESIDUE PO4 I 301
5AC5SOFTWAREASN J:238 , A S:23 , A S:24BINDING SITE FOR RESIDUE MG S 101
6AC6SOFTWAREPO4 I:301BINDING SITE FOR RESIDUE PO4 S 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OO1)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Gly B:55 -Pro B:56
2Gly D:32 -Pro D:33
3Ser E:224 -Pro E:225
4Gly F:79 -Pro F:80
5Ser G:139 -Thr G:140
6Arg J:352 -Pro J:353

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OO1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OO1)

(-) Exons   (0, 0)

(no "Exon" information available for 4OO1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:293
                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh..............eeeee......eeeee..eeeeeeeeeeee..........eeeee...hhhhh.........hhhhhhhhhhhhhhhh......hhhhh......eeeeeeeeeeee...hhhhhhhhhhhhhhhhhee..eeee..eeee........ee.......eeeeeeee..........eeee..hhhhhh...eeeeeee....eeeeeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oo1 A   3 KDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPVNEREPVPLGILHIPICVTFSFFNPQDTETNSEISIIDATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQILQLLKEDSEKRNKYAAMLTSEN 301
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202   ||  218       228       238       248       258       268       278       288       298   
                                                                                                                                                                                                                                     206|                                                                                        
                                                                                                                                                                                                                                      213                                                                                        


Chain B from PDB  Type:PROTEIN  Length:239
                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................ee...........eeeeeee..eeeeeeeeeee.............eeeeeeee...............hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee...hhhhhhhhhhhhhhhhh.......eeeeeeeee..eeee..hhhhhh..eeeeeeee....eeeeeee...ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oo1 B   4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEENAMSTVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQKRVSN 242
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233         


Chain C from PDB  Type:PROTEIN  Length:312
                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhhhhhhhh............ee.eeeee...hhhhh...........eeeeeee..eeeeeeee.eee...........ee..eeeeee........hhhhhhhhhhhhhhhhhhh.ee.........eee....eee....ee..eeeeeee.....hhhhhhhhhhhhhhh.eeeeee......eeeeeeeee.........eeeeeeeee.hhhhh...eeeee....hhhhhh...eeeeee.....eeeeeee......hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4oo1 C   6 TLETIEIHPITFPPEVLARISPELSLQRHLSLGIRPCLRKYEEFRDVAIENNTLSRYADAGNIDTKNNILGSNVLKSGKTIVITSITGGIIEETSAEDIIANYASVYPVVEVERGRVGACTDEEMTISQKLHDSILHSRILPKKALKVKAGVRSANTFSVLYPDWSYVLYAKIVVLSRTGPVFDLCWNSLMYALQSVKLPRAFIDTYEIICDQTKSVPLMINAKNIAFASNYGIVELDPECQLQNTVLIADLDTEAEETSIHSTISILAAPSGNYKQLTLVGGGAKITPEMIKRSLLLSRVRADDLSTRFNI 394
                                    15        25        35        45        55        65        75        85        95     ||124       134       144       154       164       174     ||187   ||  214       224       234       244    || 275       285       295       305   ||  332       342       352       362       372       382       392  
                                                                                                                         101|                                                        180|    191|                                     249|                                   309|                                                                   
                                                                                                                          121                                                         184     209                                      271                                    327                                                                   


Chain D from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......eeeeeee..eeeeeeeeeee............eeeeeee......hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee........hhhhhhhhhhhhhhhhhhhh.....eeeeeeeeee.....eee..hhhhhhheeeeeeeeeeeehhhheeeeeeeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oo1 D   1 MSVQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTREKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVDAGIALNSMCASIPIAIIKDTSDIIVDPTAEQLKISLSVHTLALEFVNGGKVVKNVLLLDSNGDFNEDQLFSLLELGEQKCQELVTNIRRIIQDNISPRL 221
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220 


Chain E from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..................eeee.......eeeeee.....eeeeeeeeeeee.......eeeeeee......hhhhhhhhhhhhhhh................eeeeeeeeeeeee....hhhhhhhhhhhhhhh..eeee......eeeeeee.......eeeeeeee..eeee..hhhhhh...eeeeeeee..eeeeeee............hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oo1 E   2 SLSVAEKSYLYDSLASTPSIRPDGRLPHQFRPIEIFTDFLPSSNGSSRIIASDGSECIVSIKSKVVDHHVENELLQVDVDIAGQRDDALVVETITSLLNKVLKSGSGVDSSKLQLTKKYSFKIFVDVLVISSHSHPVSLISFAIYSALNSTYLPKLISAFPTFHDYDMVKLDINPPLVFILAVVGNNMLLDPAANESEVANNGLIISWSNGKITSPIRSVALNDSNVKSFKPHLLKQGLAMVEKYAPDVVRSLEN 264
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161|      179       189       199       209       219       229       239       249       259     
                                                                                                                                                                                         161|                                                                                              
                                                                                                                                                                                          170                                                                                              


Chain F from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........ee.....eeeeee.......eeeeeeeee..eeeeeeeeeeeeee.........eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..hhhhhhhhhhhhhhhhhhhhh.......eeeee..eeeeee....eeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oo1 F   5 DRRRLLGPAAAKPMAFEQELSLHTGFIENCNGSALVEARSLGHQTSLITAVYGPRSIRGSFTSQGTISIQLKNGLLEKYNTNELKEVSSFLMGIFNSVVNLSRYPKSGIDIFVYLTYDKDLSQISSLIPHCITSITLALADAGIELVDMAGAGEANGTVVSFIKNGEEIVGFWKDDGDDEDLLECLDRCKEQYNRYRDLMISCLMNQ 248
                                    14     || 46        56        66        76        86        96       106       116       126       136       146||     171       181       191       201       211       221       231       241       
                                          20|                                                                                                     147|                                                                                     
                                           43                                                                                                      163                                                                                     


Chain G from PDB  Type:PROTEIN  Length:226
                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...................eee......eee...eeee....eeee...........eeeeeeeee...eeeee.......eeee.hhh...............eeeeeeee.......eee............ee....eeee.hhhhhhhhhh.....hhhhhhhhh..eeee....eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oo1 G   2 STFIFPGDSFPVDPTTPVKLGPGIYCDPNTQEIRPVNTGVLHVSTAYIDYSSKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTTGRDAGFGILEDGMIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGKIWVKCEELSNTLACYRTIMECCQKNDTAAFKDIAKRQFKEIL 235
                                    11        21        31        41   ||   59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229      
                                                                      45|                                                                                                                                                                                     
                                                                       54                                                                                                                                                                                     


Chain H from PDB  Type:PROTEIN  Length:279
                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee.......ee....eee.....ee...eeee..eeee...eeeeee..eeeeee...........eeeeeeeeee..eeeee......eeee.hhh....hhhhh.....eeeeeeeee.....eeee......ee...eeeee.hhhhh......eeee...eeeee....eeeeee.hhhhhhhhhhhhh.hhhhh.......hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oo1 H   5 ITITKRNGAFSDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGQMRSFLKEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNGYIWLRKTSQMDLARDTPSANSWQIYSDENDPSISNNIRQAICRYANVIKALAFCEIGITQQRIVSAYEASMVYSNVGELIEKNVMESIGSDILTAEKMRGN 357
                                    14|       59        69        79        89        99       109       119       129       139     ||161       171       181       191       201       211       221       231       241       278       288       298       308       318       328       338       348         
                                    14|                                                                                            145|                                                                                        249|                                                                                
                                     50                                                                                             158                                                                                         277                                                                                


Chain I from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....ee....eeee.eeeeee..eeeeeeee....eeeeeeee..eeeeeeee...eeeeee....eeeeee............eeeeeeeee...eeeeeeeeee.....eee...........eeeee.hhh........hhhhh.....eeeeeeee.....eeeee......ee..ee.......eeeeee..eee......ee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4oo1 I   5 FQFPEIAYPGKLICPQYGTENKDGEDIIFNYVPGPGTKLIQYEHNGRTLEAITATLVGTVRCEEEKNILVSVLPGFANNLPKEGDIVLTRVTRLSLQRANVEILAVEDKPATFSVSQASSDLGETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVRAQVLSLGDGTNYYLTTARNDLGVVFARAANGAGGLMYATDWQMMTSPVTGATEKRKCAKP 291
                                    14        24        34        44        54        64     ||108    || 132       142       152       162|      195       205       215       225       235       245       255       265       275       285      
                                                                                            70|     113|                               162|                                                                                                         
                                                                                            105      128                                186                                                                                                         


Chain J from PDB  Type:PROTEIN  Length:493
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................................hhhhhh................hhhhhhhh......................eeee....hhhhhhhhhh...eeeeeeeee.......eeeeeeee....eeeee......hhhhhhhhhh....eeee....hhhhhhhhh.......eeehhhhhhhhh....hhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.ee.............ee........hhhhhhhh.....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....hhhhhh......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh..hhhhhhhhhhhhhhhhhh..........................ee.........ee..hhhhhhhhhhhhhhhh...eeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oo1 J 128 MVEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVNLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNIKNTNSETKADGILLETISVPQIRDVMERFSVLCNSNISKSRAKPVTNSSILLGKILPREEHDIAYSKDGLPNKVKTEDIRIRAQNFKSALANLEDIIFEIEKPLVVPV 628
                                   137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       525       535       545       555       565       575       585       595       605       615       625   
                                                                                                                                                                                                                                                                                                                                                                                                                              516|                                                                                                       
                                                                                                                                                                                                                                                                                                                                                                                                                               525                                                                                                       


Chain S from PDB  Type:RNA  Length:6
                                      
                 4oo1 S  19 AAAAAA  24
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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(-) Gene Ontology  (53, 253)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CSL4_YEAST | P53859: 4ifd 5c0w 5c0x 5g06 5jea 5k36
        MTR3_YEAST | P48240: 4ifd 5c0w 5c0x 5g06 5jea 5k36
        RRP40_YEAST | Q08285: 2ja9 4ifd 5c0w 5c0x 5g06 5jea 5k36
        RRP41_YEAST | P46948: 2wp8 4ifd 5c0w 5c0x 5g06 5jea 5k36
        RRP42_YEAST | Q12277: 4ifd 5c0w 5c0x 5g06 5jea 5k36
        RRP43_YEAST | P25359: 4ifd 5c0w 5c0x 5g06 5jea 5k36
        RRP45_YEAST | Q05636: 2wp8 4ifd 5c0w 5c0x 5g06 5jea 5k36
        RRP46_YEAST | P53256: 4ifd 5c0w 5c0x 5g06 5jea 5k36
        RRP4_YEAST | P38792: 4ifd 5c0w 5c0x 5g06 5jea 5k36
        RRP6_YEAST | Q12149: 1m0y 2hbj 2hbk 2hbl 2hbm 4ifd 4wfc 4wfd 5c0w 5c0x 5c0y 5k36

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4OO1)