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(-) Description

Title :  HYDE FROM T. MARITIMA IN COMPLEX WITH 4R-TCA
 
Authors :  R. Rohac, P. Amara, A. Benjdia, L. Martin, P. Ruffie, A. Favier, O. Berte J. M. Mouesca, J. C. Fontecilla-Camps, Y. Nicolet
Date :  17 Dec 15  (Deposition) - 06 Apr 16  (Release) - 06 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.18
Chains :  Asym./Biol. Unit :  A
Keywords :  Radical Sam Enzyme, Complex, Fefe-Hydrogenase Maturase, Thiazolidine, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Rohac, P. Amara, A. Benjdia, L. Martin, P. Ruffie, A. Favier, O. Berteau, J. M. Mouesca, J. C. Fontecilla-Camps, Y. Nicolet
Carbon-Sulfur Bond-Forming Reaction Catalysed By The Radica Sam Enzyme Hyde.
Nat. Chem. V. 8 491 2016
PubMed-ID: 27102684  |  Reference-DOI: 10.1038/NCHEM.2490

(-) Compounds

Molecule 1 - [FEFE] HYDROGENASE MATURASE SUBUNIT HYDE
    Chains: A
    EC Number: 1.8.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TM_1269, THEMA_07990, TMARI_1274
    Organism Scientific: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
    Organism Taxid: 243274
    Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 14)

Asymmetric/Biological Unit (8, 14)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2CPS5Ligand/Ion3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
3FES1Ligand/IonFE2/S2 (INORGANIC) CLUSTER
4H2S2Ligand/IonHYDROSULFURIC ACID
5OTY1Mod. Amino Acid2-HYDROXY-L-TYROSINE
6PRS1Mod. ResidueTHIOPROLINE
7SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
8SF41Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:63 , CYS A:67 , CYS A:70 , GLY A:109 , SAH A:410binding site for residue SF4 A 401
02AC2SOFTWAREGLN A:98 , PHE A:99 , GLY A:100 , PRO A:276 , GLY A:277 , GLU A:280 , ARG A:284 , MET A:324 , LEU A:330 , CPS A:406 , HOH A:571 , HOH A:610 , HOH A:643 , HOH A:682 , HOH A:684 , HOH A:775 , HOH A:781 , HOH A:898 , HOH A:912binding site for residue CPS A 402
03AC3SOFTWARELYS A:37 , ASP A:40 , ARG A:92 , LYS A:170 , ARG A:284 , SER A:297 , LYS A:315 , ASP A:316 , THR A:317 , CPS A:405 , HOH A:605 , HOH A:612 , HOH A:625 , HOH A:679 , HOH A:714 , HOH A:865 , HOH A:914 , HOH A:943binding site for residue CPS A 403
04AC4SOFTWAREARG A:29 , GLU A:33 , THR A:247 , LEU A:250 , CPS A:405 , HOH A:656 , HOH A:680 , HOH A:694 , HOH A:937binding site for residue CPS A 404
05AC5SOFTWAREARG A:29 , THR A:317 , ALA A:318 , CPS A:403 , CPS A:404 , CPS A:406 , HOH A:591 , HOH A:594 , HOH A:692 , HOH A:737 , HOH A:742 , HOH A:786binding site for residue CPS A 405
06AC6SOFTWARELYS A:128 , PRO A:321 , MET A:324 , LYS A:325 , GLU A:328 , CPS A:402 , CPS A:405 , HOH A:647 , HOH A:663 , HOH A:703 , HOH A:746 , HOH A:880 , HOH A:917 , HOH A:934 , HOH A:941binding site for residue CPS A 406
07AC7SOFTWAREARG A:54 , THR A:134 , ARG A:155 , HOH A:895binding site for residue CL A 407
08AC8SOFTWAREARG A:159 , GLY A:226 , PRO A:266 , PRS A:413 , HOH A:798binding site for residue CL A 408
09AC9SOFTWAREARG A:279 , CYS A:311 , GLU A:314 , CYS A:319 , CYS A:322 , H2S A:412 , HOH A:794binding site for residue FES A 409
10AD1SOFTWARETYR A:69 , GLN A:107 , SER A:108 , SER A:136 , ARG A:159 , GLU A:161 , ARG A:180 , MET A:199 , PRO A:229 , ILE A:231 , TYR A:303 , LEU A:305 , TYR A:306 , SF4 A:401 , PRS A:413 , HOH A:580 , HOH A:588 , HOH A:595 , HOH A:700binding site for residue SAH A 410
11AD2SOFTWARECYS A:322binding site for residue H2S A 411
12AD3SOFTWARECYS A:311 , CYS A:319 , FES A:409binding site for residue H2S A 412
13AD4SOFTWAREGLN A:107 , THR A:268 , THR A:269 , ALA A:270 , TYR A:306 , CL A:408 , SAH A:410 , HOH A:558 , HOH A:642 , HOH A:758binding site for residue PRS A 413

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:319 -A:412
2A:322 -A:411

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Met A:115 -Pro A:116
2Ser A:297 -Pro A:298

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FF3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FF3)

(-) Exons   (0, 0)

(no "Exon" information available for 5FF3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:347
                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeee........................hhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhh...eee......hhhhhhhhh...hhhhhhhhhhhhhhh..eeeeeeee.....hhhhhhhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhhhh.......hhhhhhhh.hhhhhhhh....ee........hhhhh..............hhhhhhhhhhhhh..ee............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ff3 A   1 MTGREILEKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYyMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIMPNWTPSPYRQLYQLYPGKICVFEKDTACIPCVMKMIELLGRKPGRDWGGRKRVFET 347
                                    10        20        30        40        50        60        70        80        90       100       110   |   120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       
                                                                                                                                           114-OTY
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FF3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FF3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FF3)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  5ff3
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  HYDE_THEMA | Q9X0Z6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HYDE_THEMA | Q9X0Z6: 3ciw 3cix 3iix 3iiz 4jxc 4jy8 4jy9 4jyd 4jye 4jyf 5fep 5fes 5few 5fex 5fez 5ff0 5ff2 5ff4

(-) Related Entries Specified in the PDB File

3iix 3iiz 5fep 5fes 5few 5fex 5fez 5ff0 5ff2