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(-) Description

Title :  HYDE FROM T. MARITIMA IN COMPLEX WITH (2R,4R)-MESETDA
 
Authors :  R. Rohac, P. Amara, A. Benjdia, L. Martin, P. Ruffie, A. Favier, O. Berte J. M. Mouesca, J. C. Fontecilla-Camps, Y. Nicolet
Date :  17 Dec 15  (Deposition) - 06 Apr 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.27
Chains :  Asym./Biol. Unit :  A
Keywords :  Radical Sam Enzyme, Fefe-Hydrogenase Maturase, Thiazolidine, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Rohac, P. Amara, A. Benjdia, L. Martin, P. Ruffie, A. Favier, O. Berteau, J. M. Mouesca, J. C. Fontecilla-Camps, Y. Nicolet
Carbon-Sulfur Bond-Forming Reaction Catalysed By The Radica Sam Enzyme Hyde.
Nat. Chem. V. 8 491 2016
PubMed-ID: 27102684  |  Reference-DOI: 10.1038/NCHEM.2490

(-) Compounds

Molecule 1 - [FEFE] HYDROGENASE MATURASE SUBUNIT HYDE
    Chains: A
    EC Number: 1.8.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TM_1269, THEMA_07990, TMARI_1274
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 10)

Asymmetric/Biological Unit (6, 10)
No.NameCountTypeFull Name
19SE1Ligand/Ion(2~{R},4~{R})-2-METHYL-1,3-SELENAZOLIDINE-2,4-DICARBOXYLIC ACID
2CL1Ligand/IonCHLORIDE ION
3CPS5Ligand/Ion3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
4OTY1Mod. Amino Acid2-HYDROXY-L-TYROSINE
5SAM1Ligand/IonS-ADENOSYLMETHIONINE
6SF41Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:63 , CYS A:67 , CYS A:70 , SAM A:408binding site for residue SF4 A 401
2AC2SOFTWAREGLN A:98 , PHE A:99 , GLY A:100 , PRO A:276 , GLY A:277 , GLU A:280 , ARG A:284 , MET A:324 , LEU A:330 , CPS A:405 , CPS A:406 , HOH A:538 , HOH A:613 , HOH A:633 , HOH A:687 , HOH A:732 , HOH A:782 , HOH A:929binding site for residue CPS A 402
3AC3SOFTWARELYS A:37 , ASP A:40 , LYS A:170 , ARG A:284 , SER A:297 , LYS A:315 , ASP A:316 , THR A:317 , HOH A:575 , HOH A:599 , HOH A:607 , HOH A:640 , HOH A:719 , HOH A:888binding site for residue CPS A 403
4AC4SOFTWAREARG A:29 , GLU A:33 , THR A:247 , LEU A:250 , CPS A:405 , HOH A:517 , HOH A:670 , HOH A:672 , HOH A:960binding site for residue CPS A 404
5AC5SOFTWAREARG A:29 , LYS A:315 , THR A:317 , ALA A:318 , CPS A:402 , CPS A:404 , CPS A:406 , HOH A:544 , HOH A:606 , HOH A:681 , HOH A:704 , HOH A:720binding site for residue CPS A 405
6AC6SOFTWARELYS A:128 , PRO A:321 , MET A:324 , LYS A:325 , GLU A:328 , CPS A:402 , CPS A:405 , HOH A:501 , HOH A:658 , HOH A:697 , HOH A:731 , HOH A:796 , HOH A:884 , HOH A:932 , HOH A:954binding site for residue CPS A 406
7AC7SOFTWAREARG A:54 , THR A:134 , ARG A:155binding site for residue CL A 407
8AC8SOFTWARETYR A:69 , CYS A:70 , SER A:108 , SER A:136 , GLY A:138 , ARG A:159 , GLU A:161 , ARG A:180 , MET A:199 , PRO A:229 , ILE A:231 , TYR A:303 , LEU A:305 , TYR A:306 , SF4 A:401 , HOH A:582 , HOH A:627 , HOH A:628 , HOH A:748binding site for residue SAM A 408
9AC9SOFTWAREILE A:56 , ARG A:159 , THR A:268 , THR A:269 , ALA A:270 , MET A:291 , TYR A:306 , HOH A:533 , HOH A:564 , HOH A:602 , HOH A:716 , HOH A:799binding site for residue 9SE A 409

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FES)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Met A:115 -Pro A:116
2Ser A:297 -Pro A:298

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FES)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FES)

(-) Exons   (0, 0)

(no "Exon" information available for 5FES)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:346
                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeee........................hhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhh...eee......hhhhhhhhh...hhhhhhhhhhhhhhh..eeee..ee.....hhhhhhhhhhhhhhhh..ee..ee...............hhhhhhhhhhhhhhhh.......hhhhhhhh.hhhhhhhh....ee........hhhhh..............hhhhhhhhhhhhh..ee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fes A   2 TGREILEKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYyMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIMPNWTPSPYRQLYQLYPGKISVFEKDTASIPSVMKMIELLGRKPGRDWGGRKRVFET 347
                                    11        21        31        41        51        61        71        81        91       101       111  |    121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341      
                                                                                                                                          114-OTY
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FES)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FES)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FES)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HYDE_THEMA | Q9X0Z6: 3ciw 3cix 3iix 3iiz 4jxc 4jy8 4jy9 4jyd 4jye 4jyf 5fep 5few 5fex 5fez 5ff0 5ff2 5ff3 5ff4

(-) Related Entries Specified in the PDB File

3iix 3iiz 5fep