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(-) Description

Title :  STAPHYLOCOCCUS AUREUS TYPE II PANTOTHENATE KINASE IN COMPLEX WITH A PANTOTHENATE ANALOG
 
Authors :  K. Mottaghi, S. J. Hughes, W. Tempel, B. Hong, H. Park, Structural Geno Consortium (Sgc)
Date :  05 Nov 15  (Deposition) - 10 Aug 16  (Release) - 09 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Pantothenate Kinase, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. J. Hughes, L. Barnard, K. Mottaghi, W. Tempel, T. Antoshchenko, B. S. Hong, A. Allali-Hassani, D. Smil, M. Vedadi, E. Strauss, H. W. Par
Discovery Of Potent Pantothenamide Inhibitors Of Staphylococcus Aureus Pantothenate Kinase Through A Minimal Sar Study: Inhibition Is Due To Trapping Of The Product.
Acs Infect Dis. V. 2 627 2016
PubMed-ID: 27759386  |  Reference-DOI: 10.1021/ACSINFECDIS.6B00090

(-) Compounds

Molecule 1 - TYPE II PANTOTHENATE KINASE
    Chains: A
    EC Number: 2.7.1.33
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21-V2R-TR
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: COAW, MW2054
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 196620
    Strain: MW2
    Synonym: PANK-II,PANTOTHENIC ACID KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric Unit (4, 5)
No.NameCountTypeFull Name
13V91Ligand/IonN-(1,3-BENZODIOXOL-5-YLMETHYL)-N~3~-[(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-BETA-ALANINAMIDE
2ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
3MG1Ligand/IonMAGNESIUM ION
4UNX2Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
13V92Ligand/IonN-(1,3-BENZODIOXOL-5-YLMETHYL)-N~3~-[(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-BETA-ALANINAMIDE
2ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4UNX4Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:8 , GLY A:9 , THR A:10 , LEU A:11 , LYS A:13 , LEU A:28 , GLY A:98 , THR A:99 , GLY A:121 , GLY A:122 , GLN A:125 , TYR A:137 , GLY A:224 , SER A:225 , SER A:226 , MG A:302 , 3V9 A:303 , HOH A:424 , HOH A:456 , HOH A:487 , HOH A:508 , HOH A:513 , HOH A:564binding site for residue ADP A 301
2AC2SOFTWAREADP A:301 , 3V9 A:303 , HOH A:424 , HOH A:435 , HOH A:487 , HOH A:513binding site for residue MG A 302
3AC3SOFTWAREGLY A:9 , GLU A:70 , THR A:99 , GLY A:100 , THR A:101 , SER A:102 , ARG A:113 , GLY A:116 , ILE A:117 , THR A:172 , ALA A:173 , GLU A:202 , THR A:206 , TYR A:240 , ADP A:301 , MG A:302 , HOH A:433 , HOH A:435 , HOH A:450 , HOH A:481 , HOH A:487 , HOH A:513 , HOH A:584binding site for residue 3V9 A 303

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5ELZ)

 Sequence-Structure Mapping

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(-) Exons   (0, 0)

(no "Exon" information available for 5ELZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...eeeeeeee..eeeeeeee..hhhhhhhhhhh.....eeee..hhhhhhhh....eee.hhhhhhhhhhhhhhhhh......eeeeee...eeeeee....eeeeeee..hhhhhhhhhhhhhh..hhhhhhhhhh........eehhhhhh..........eee...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhh.hhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5elz A   2 KVGIDAGGTLIKIVQEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENINIPAQIFVEFDAASQGLGILLKEQGHDLADYIFANVGTGTSLHYFDGQSQRRVGGIGTGGGMIQGLGYLLSQITDYKQLTDMAQHGDRNTIDLKVRHIYKDTEPPIPGDLTAANFGHVLHHLDADFTPSNKLAAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLEKHHHHHH 273
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ELZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ELZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ELZ)

(-) Gene Ontology  (8, 16)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COAW_STAA8 | Q2FWC7: 5jic
        COAW_STAAW | Q8NVG0: 4m7x 4m7y 5jic

(-) Related Entries Specified in the PDB File

4m7x 4m7y