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(-) Description

Title :  STAPHYLOCOCCUS AUREUS TYPE II PANTOTHENATE KINASE IN COMPLEX WITH A PANTOTHENATE ANALOG
 
Authors :  K. Mottaghi, B. Hong, W. Tempel, H. Park
Date :  12 Aug 13  (Deposition) - 03 Sep 14  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.42
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Pantothenate Kinase, Inhibitor, Antibacterial, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. J. Hughes, L. Barnard, K. Mottaghi, W. Tempel, T. Antoshchenko, B. S. Hong, A. Allali-Hassani, D. Smil, M. Vedadi, E. Strauss, H. W. Par
Discovery Of Potent Pantothenamide Inhibitors Of Staphylococcus Aureus Pantothenate Kinase Through A Minimal Sar Study: Inhibition Is Due To Trapping Of The Product.
Acs Infect Dis V. 2 627 2016
PubMed-ID: 27759386  |  Reference-DOI: 10.1021/ACSINFECDIS.6B00090

(-) Compounds

Molecule 1 - TYPE II PANTOTHENATE KINASE
    Chains: A
    EC Number: 2.7.1.33
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21-V2R-TR
    Expression System Taxid: 562
    Gene: COAW, MW2054
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 196620
    Strain: MW2
    Synonym: PANK-II, PANTOTHENIC ACID KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric Unit (4, 15)
No.NameCountTypeFull Name
127Q1Ligand/IonN-HEPTYL-N~3~-[(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-BETA-ALANINAMIDE
2ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
3MG1Ligand/IonMAGNESIUM ION
4UNX12Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (3, 28)
No.NameCountTypeFull Name
127Q2Ligand/IonN-HEPTYL-N~3~-[(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-BETA-ALANINAMIDE
2ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4UNX24Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:8 , GLY A:9 , THR A:10 , LEU A:11 , LYS A:13 , LEU A:28 , GLY A:98 , THR A:99 , GLY A:121 , GLY A:122 , GLN A:125 , TYR A:137 , GLY A:224 , SER A:225 , SER A:226 , HIS A:228 , MG A:302 , 27Q A:315 , HOH A:402 , HOH A:403 , HOH A:404 , HOH A:422 , HOH A:471 , HOH A:494BINDING SITE FOR RESIDUE ADP A 301
2AC2SOFTWAREADP A:301 , 27Q A:315 , HOH A:401 , HOH A:402 , HOH A:403 , HOH A:404BINDING SITE FOR RESIDUE MG A 302
3AC3SOFTWAREGLY A:9 , GLU A:70 , THR A:99 , GLY A:100 , THR A:101 , SER A:102 , ARG A:113 , GLY A:116 , ILE A:117 , THR A:172 , ALA A:173 , GLU A:202 , THR A:206 , TYR A:240 , ADP A:301 , MG A:302 , HOH A:401 , HOH A:403 , HOH A:404 , HOH A:411 , HOH A:429 , HOH A:492BINDING SITE FOR RESIDUE 27Q A 315

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M7X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4M7X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M7X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M7X)

(-) Exons   (0, 0)

(no "Exon" information available for 4M7X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...eeeeeee....eeeeeee..hhhhhhhhhhh.....eeee..hhhhhhhh....eee.hhhhhhhhhhhhhhhhh......eeeeee...eeeeee....eeeeeee..hhhhhhhhhhhhhh..hhhhhhhhhh........eehhhhhh..........eee...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeehhhhh.hhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m7x A   1 MKVGIDAGGTLIKIVQEQDNQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENINIPAQIFVEFDAASQGLGILLKEQGHDLADYIFANVGTGTSLHYFDGQSQRRVGGIGTGGGMIQGLGYLLSQITDYKQLTDMAQHGDRNTIDLKVRHIYKDTEPPIPGDLTAANFGHVLHHLDADFTPSNKLAAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLEKHHHHHH 273
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M7X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M7X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M7X)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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  4m7x
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COAW_STAAW | Q8NVG0: 4m7y 5elz 5jic

(-) Related Entries Specified in the PDB File

4m7y