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(-) Description

Title :  STAPHYLOCOCCUS AUREUS TYPE II PANTOTHENATE KINASE IN COMPLEX WITH A PANTOTHENATE ANALOG
 
Authors :  S. J. Hughes, T. Antoshchenko, K. Mottaghi, L. Barnard, E. Strauss, H. P
Date :  22 Apr 16  (Deposition) - 10 Aug 16  (Release) - 02 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Pantothenamide, Inhibitor, Antimicrobial, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. J. Hughes, L. Barnard, K. Mottaghi, W. Tempel, T. Antoshchenko, B. S. Hong, A. Allali-Hassani, D. Smil, M. Vedadi, E. Strauss, H. W. Par
Discovery Of Potent Pantothenamide Inhibitors Of Staphylococcus Aureus Pantothenate Kinase Through A Minimal Sar Study: Inhibition Is Due To Trapping Of The Product.
Acs Infect Dis. V. 2 627 2016
PubMed-ID: 27759386  |  Reference-DOI: 10.1021/ACSINFECDIS.6B00090

(-) Compounds

Molecule 1 - TYPE II PANTOTHENATE KINASE
    Chains: A
    EC Number: 2.7.1.33
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: COAW, MW2054
    Organism Scientific: STAPHYLOCOCCUS AUREUS (STRAIN MW2)
    Organism Taxid: 196620
    Strain: MW2
    Synonym: PANK-II,PANTOTHENIC ACID KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION
3N7E1Ligand/IonN~3~-[(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-N-(5-METHOXYPENTYL)-BETA-ALANINAMIDE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3N7E2Ligand/IonN~3~-[(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-N-(5-METHOXYPENTYL)-BETA-ALANINAMIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREADP A:302 , N7E A:303 , HOH A:424 , HOH A:431 , HOH A:487 , HOH A:491binding site for residue MG A 301
2AC2SOFTWAREGLY A:8 , GLY A:9 , THR A:10 , LEU A:11 , LYS A:13 , LEU A:28 , GLY A:98 , THR A:99 , GLY A:121 , GLY A:122 , GLN A:125 , TYR A:137 , GLY A:224 , SER A:225 , SER A:226 , HIS A:228 , MG A:301 , N7E A:303 , HOH A:424 , HOH A:465 , HOH A:487 , HOH A:491 , HOH A:548binding site for residue ADP A 302
3AC3SOFTWAREGLY A:9 , GLU A:70 , THR A:99 , GLY A:100 , THR A:101 , SER A:102 , ARG A:113 , GLY A:116 , ILE A:117 , ASP A:170 , LEU A:171 , THR A:172 , ALA A:173 , GLU A:202 , TYR A:240 , MG A:301 , ADP A:302 , HOH A:431 , HOH A:442 , HOH A:451 , HOH A:487 , HOH A:491 , HOH A:599binding site for residue N7E A 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JIC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JIC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JIC)

(-) Exons   (0, 0)

(no "Exon" information available for 5JIC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...eeeeee...eeeeee..hhhhhhhhhhh.....eeee..hhhhhhhh....eee.hhhhhhhhhhhhhhhhh......eeeeee...eeeeee....eeeeeee..hhhhhhhhhhhhhh..hhhhhhhhhh........eehhhhhh..........eee...hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeehhhhh.hhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jic A   2 KVGIDAGGTLIKIVQEQRTFKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIAENINIPAQIFVEFDAASQGLGILLKEQGHDLADYIFANVGTGTSLHYFDGQSQRRVGGIGTGGGMIQGLGYLLSQITDYKQLTDMAQHGDRNTIDLKVRHIYKDTEPPIPGDLTAANFGHVLHHLDADFTPSNKLAAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLEKHHHHHH 273
                                    11     || 24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264         
                                          17|                                                                                                                                                                                                                                                            
                                           21
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JIC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JIC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JIC)

(-) Gene Ontology  (8, 16)

Asymmetric Unit(hide GO term definitions)

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  5jic
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  COAW_STAAW | Q8NVG0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COAW_STAA8 | Q2FWC7: 5elz
        COAW_STAAW | Q8NVG0: 4m7x 4m7y 5elz

(-) Related Entries Specified in the PDB File

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