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(-) Description

Title :  ACETYCHOLINESTERASE METHYLENE BLUE NO PEG
 
Authors :  O. Dym
Date :  07 Sep 15  (Deposition) - 30 Mar 16  (Release) - 01 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Inhibitor, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Dym, W. Song, C. Felder, E. Roth, V. Shnyrov, Y. Ashani, Y. Xu, R. P. Joosten, L. Weiner, J. L. Sussman, I. Silman
The Impact Of Crystallization Conditions On Structure-Based Drug Design: A Case Study On The Methylene Blue/Acetylcholinesterase Complex.
Protein Sci. V. 25 1096 2016
PubMed-ID: 26990888  |  Reference-DOI: 10.1002/PRO.2923

(-) Compounds

Molecule 1 - ACETYLCHOLINESTERASE
    Chains: A
    EC Number: 3.1.1.7
    Organism Common: PACIFIC ELECTRIC RAY
    Organism Scientific: TORPEDO CALIFORNICA
    Organism Taxid: 7787
    Synonym: ACHE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 24)

Asymmetric/Biological Unit (6, 24)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2FUC1Ligand/IonALPHA-L-FUCOSE
3MAN2Ligand/IonALPHA-D-MANNOSE
4MBT1Ligand/Ion3,7-BIS(DIMETHYLAMINO)PHENOTHIAZIN-5-IUM
5NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
6SO415Ligand/IonSULFATE ION

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:70 , TYR A:121 , TRP A:279 , PHE A:330 , PHE A:331 , TYR A:334 , HOH A:702binding site for residue MBT A 601
02AC2SOFTWARESER A:237 , ARG A:243binding site for residue SO4 A 610
03AC3SOFTWARELYS A:346 , GLY A:384binding site for residue SO4 A 611
04AC4SOFTWAREMET A:379 , HIS A:513 , GLN A:514binding site for residue SO4 A 612
05AC5SOFTWAREPRO A:106 , LYS A:107 , SER A:108 , THR A:109binding site for residue SO4 A 613
06AC6SOFTWAREHIS A:406 , ASN A:525 , GLN A:526binding site for residue SO4 A 614
07AC7SOFTWAREASN A:424 , HIS A:425 , ASN A:506 , THR A:507 , GLU A:508binding site for residue SO4 A 615
08AC8SOFTWARETHR A:459 , ALA A:460 , GLU A:461binding site for residue SO4 A 616
09AC9SOFTWAREVAL A:22 , LEU A:23 , LYS A:133 , TYR A:134binding site for residue SO4 A 617
10AD1SOFTWAREARG A:289 , VAL A:360 , PRO A:361 , HIS A:362 , HIS A:398binding site for residue SO4 A 618
11AD2SOFTWAREPRO A:433 , GLU A:434binding site for residue SO4 A 619
12AD3SOFTWAREGLN A:68 , SER A:91 , GLU A:92binding site for residue SO4 A 620
13AD4SOFTWAREPRO A:213 , SER A:343 , GLU A:344binding site for residue SO4 A 621
14AD5SOFTWARESER A:490 , LYS A:491binding site for residue SO4 A 622
15AD6SOFTWAREPRO A:76 , ARG A:220 , ARG A:221 , GLN A:318 , ASN A:416binding site for residue SO4 A 623
16AD7SOFTWAREARG A:46 , GLN A:162 , ASN A:382binding site for residue SO4 A 624
17AD8SOFTWAREASN A:59 , SER A:61binding site for Poly-Saccharide residues NAG A 602 through FUC A 603 bound to ASN A 59
18AD9SOFTWAREASN A:416 , MAN A:609binding site for Mono-Saccharide NAG A 604 bound to ASN A 416
19AE1SOFTWARELYS A:413 , PHE A:414 , GLU A:455 , ASN A:457 , NAG A:604binding site for Poly-Saccharide residues NAG A 605 through MAN A 609 bound to ASN A 457

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:67 -A:94
2A:254 -A:265
3A:402 -A:521

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:103 -Pro A:104

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DLP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DLP)

(-) Exons   (0, 0)

(no "Exon" information available for 5DLP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:532
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.eeeee..eeeeeeeeee.....hhhhh............eee..................hhhhhh............eeeeee.......eeeeeee...........hhhhhhhhhhhhhh.eeee....hhhhhhh..........hhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeehhhhhhhhhhhhhhhhhh...eeeee...........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhh.....eeeeeee...hhhhhhhhh...........hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.........hhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh....................eeeee......eee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dlp A   4 SELLVNTKSGKVMGTRVPVLSSHISAFLGIPFAEPPVGNMRFRRPEPKKPWSGVWNASTYPNNCQQYVDEQFPGFSGSEMWNPNREMSEDCLYLNIWVPSPRPKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPNCPWASVSVAEGRRRAVELGRNLNCNLNSDEELIHCLREKKPQELIDVEWNVLPFDSIFRFSFVPVIDGEFFPTSLESMLNSGNFKKTQILLGVNKDEGSFFLLYGAPGFSKDSESKISREDFMSGVKLSVPHANDLGLDAVTLQYTDWMDDNNGIKNRDGLDDIVGDHNVICPLMHFVNKYTKFGNGTYLYFFNHRASNLVWPEWMGVIHGYEIEFVFGLPLVKELNYTAEEEALSRRIMHYWATFAKTGNPNEPHSQESKWPLFTTKEQKFIDLNTEPMKVHQRLRVQMCVFWNQFLPKLLNAT 535
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DLP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DLP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DLP)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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  ACES_TETCF | P04058
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  3.1.1.7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACES_TETCF | P04058: 1acj 1acl 1amn 1ax9 1cfj 1dx6 1e3q 1e66 1ea5 1eea 1eve 1fss 1gpk 1gpn 1gqr 1gqs 1h22 1h23 1hbj 1jga 1jgb 1jjb 1oce 1odc 1qid 1qie 1qif 1qig 1qih 1qii 1qij 1qik 1qim 1qti 1som 1u65 1ut6 1vot 1vxo 1vxr 1w4l 1w6r 1w75 1w76 1zgb 1zgc 2ace 2ack 2bag 2c4h 2c58 2c5f 2c5g 2cek 2ckm 2cmf 2dfp 2j3d 2j3q 2j4f 2v96 2v97 2v98 2va9 2vja 2vjb 2vjc 2vjd 2vq6 2vt6 2vt7 2w6c 2wfz 2wg0 2wg1 2wg2 2xi4 3ace 3gel 3i6m 3i6z 3m3d 3zv7 4ace 4tvk 4w63 4x3c 5bwb 5bwc 5e2i 5e4j 5e4t 5ehx 5ei5 5ih7

(-) Related Entries Specified in the PDB File

1w6r 2w9i