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(-) Description

Title :  ACETYCHOLINESTERASE METHYLENE BLUE WITH PEG
 
Authors :  O. Dym
Date :  07 Oct 15  (Deposition) - 30 Mar 16  (Release) - 01 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.43
Chains :  Asym./Biol. Unit :  A
Keywords :  Inhibitor, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Dym, W. Song, C. Felder, E. Roth, V. Shnyrov, Y. Ashani, Y. Xu, R. P. Joosten, L. Weiner, J. L. Sussman, I. Silman
The Impact Of Crystallization Conditions On Structure-Based Drug Design: A Case Study On The Methylene Blue/Acetylcholinesterase Complex.
Protein Sci. V. 25 1096 2016
PubMed-ID: 26990888  |  Reference-DOI: 10.1002/PRO.2923

(-) Compounds

Molecule 1 - ACETYLCHOLINESTERASE
    Chains: A
    EC Number: 3.1.1.7
    Organism Common: PACIFIC ELECTRIC RAY
    Organism Scientific: TORPEDO CALIFORNICA
    Organism Taxid: 7787
    Synonym: ACHE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 38)

Asymmetric/Biological Unit (8, 38)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2EDO9Ligand/Ion1,2-ETHANEDIOL
3FUC1Ligand/IonALPHA-L-FUCOSE
4MAN3Ligand/IonALPHA-D-MANNOSE
5MBT1Ligand/Ion3,7-BIS(DIMETHYLAMINO)PHENOTHIAZIN-5-IUM
6NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
7PEG12Ligand/IonDI(HYDROXYETHYL)ETHER
8PGE5Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (28, 28)

Asymmetric Unit (28, 28)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:70 , TYR A:121 , GLN A:185 , TRP A:279 , TYR A:334 , PEG A:614 , PGE A:625 , PGE A:629binding site for residue MBT A 612
02AC2SOFTWAREASN A:230 , SER A:235 , HOH A:769binding site for residue PEG A 613
03AC3SOFTWAREGLN A:74 , HIS A:181 , LYS A:192 , TYR A:334 , GLY A:335 , MBT A:612binding site for residue PEG A 614
04AC4SOFTWAREASP A:297binding site for residue PEG A 615
05AC5SOFTWAREARG A:105 , PRO A:106 , GLN A:185 , PHE A:186 , ASN A:251 , PEG A:621binding site for residue PEG A 616
06AC6SOFTWAREHIS A:513 , HOH A:749binding site for residue PEG A 617
07AC7SOFTWARELYS A:325 , ASP A:326 , ASP A:389 , ASP A:393 , GLU A:434 , EDO A:630 , HOH A:762binding site for residue PEG A 618
08AC8SOFTWARETYR A:63 , TRP A:100 , ASN A:131binding site for residue PEG A 619
09AC9SOFTWARELYS A:14binding site for residue PEG A 620
10AD1SOFTWAREGLU A:247 , ARG A:250 , PEG A:616binding site for residue PEG A 621
11AD2SOFTWARELYS A:346binding site for residue PEG A 622
12AD3SOFTWARELEU A:494binding site for residue PEG A 623
13AD4SOFTWAREGLY A:117 , GLY A:118 , TYR A:121 , GLU A:199 , MBT A:612 , HOH A:701 , HOH A:736binding site for residue PGE A 625
14AD5SOFTWAREVAL A:57 , TRP A:58 , ASN A:59 , NAG A:601binding site for residue PGE A 626
15AD6SOFTWAREGLU A:499 , LYS A:501binding site for residue PGE A 627
16AD7SOFTWAREASN A:9 , ARG A:243 , GLU A:247 , VAL A:281 , LEU A:282binding site for residue PGE A 628
17AD8SOFTWARELYS A:11 , ASP A:182 , GLN A:185 , TRP A:279 , ASP A:285 , SER A:286 , TYR A:334 , GLY A:335 , MBT A:612 , HOH A:810binding site for residue PGE A 629
18AD9SOFTWAREGLU A:344 , ILE A:385 , ARG A:388 , PEG A:618 , HOH A:790binding site for residue EDO A 630
19AE1SOFTWAREPRO A:232 , ARG A:289 , PRO A:361 , HIS A:362binding site for residue EDO A 631
20AE2SOFTWARELYS A:11 , TRP A:54binding site for residue EDO A 632
21AE3SOFTWARETRP A:432binding site for residue EDO A 633
22AE4SOFTWARETHR A:109 , GLU A:139 , GLU A:140 , LYS A:478binding site for residue EDO A 634
23AE5SOFTWAREARG A:44 , GLU A:268 , LYS A:269binding site for residue EDO A 636
24AE6SOFTWARESER A:55 , VAL A:57binding site for residue EDO A 637
25AE7SOFTWAREHIS A:406 , ASN A:525 , HOH A:763binding site for residue EDO A 638
26AE8SOFTWAREASN A:59 , SER A:61 , PGE A:626binding site for Poly-Saccharide residues NAG A 601 through FUC A 602 bound to ASN A 59
27AE9SOFTWAREASN A:255 , GLU A:261 , ASN A:416 , MAN A:611binding site for Poly-Saccharide residues NAG A 603 through MAN A 606 bound to ASN A 416
28AF1SOFTWARELYS A:413 , PHE A:414 , GLY A:415 , LEU A:456 , ASN A:457 , NAG A:603 , NAG A:604binding site for Poly-Saccharide residues NAG A 607 through MAN A 611 bound to ASN A 457

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:67 -A:94
2A:254 -A:265
3A:402 -A:521

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:103 -Pro A:104

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E4T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E4T)

(-) Exons   (0, 0)

(no "Exon" information available for 5E4T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:532
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.eeeee..eeeeeeeeee.....hhhhh............eee..................hhhhhh............eeeeee.......eeeeeee...........hhhhhhhhhhhhhh.eeee....hhhhhhh..........hhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeehhhhhhhhhhhhh..hhhhh.eeeee...........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhh.....eeeeeee...hhhhhhh.............hhhhhhhhhhhhh...hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.........hhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh....................eeeee......eee..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e4t A   4 SELLVNTKSGKVMGTRVPVLSSHISAFLGIPFAEPPVGNMRFRRPEPKKPWSGVWNASTYPNNCQQYVDEQFPGFSGSEMWNPNREMSEDCLYLNIWVPSPRPKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPNCPWASVSVAEGRRRAVELGRNLNCNLNSDEELIHCLREKKPQELIDVEWNVLPFDSIFRFSFVPVIDGEFFPTSLESMLNSGNFKKTQILLGVNKDEGSFFLLYGAPGFSKDSESKISREDFMSGVKLSVPHANDLGLDAVTLQYTDWMDDNNGIKNRDGLDDIVGDHNVICPLMHFVNKYTKFGNGTYLYFFNHRASNLVWPEWMGVIHGYEIEFVFGLPLVKELNYTAEEEALSRRIMHYWATFAKTGNPNEPHSQESKWPLFTTKEQKFIDLNTEPMKVHQRLRVQMCVFWNQFLPKLLNAT 535
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0 ; only for superseded entry 2W9I: 1,1)

(no "SCOP Domain" information available for 5E4T, only for superseded entry 2W9I replaced by 5E4T)

(-) CATH Domains  (0, 0 ; only for superseded entry 2W9I: 1,1)

(no "CATH Domain" information available for 5E4T, only for superseded entry 2W9I replaced by 5E4T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E4T)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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  5e4t
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  3.1.1.7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACES_TETCF | P04058: 1acj 1acl 1amn 1ax9 1cfj 1dx6 1e3q 1e66 1ea5 1eea 1eve 1fss 1gpk 1gpn 1gqr 1gqs 1h22 1h23 1hbj 1jga 1jgb 1jjb 1oce 1odc 1qid 1qie 1qif 1qig 1qih 1qii 1qij 1qik 1qim 1qti 1som 1u65 1ut6 1vot 1vxo 1vxr 1w4l 1w6r 1w75 1w76 1zgb 1zgc 2ace 2ack 2bag 2c4h 2c58 2c5f 2c5g 2cek 2ckm 2cmf 2dfp 2j3d 2j3q 2j4f 2v96 2v97 2v98 2va9 2vja 2vjb 2vjc 2vjd 2vq6 2vt6 2vt7 2w6c 2wfz 2wg0 2wg1 2wg2 2xi4 3ace 3gel 3i6m 3i6z 3m3d 3zv7 4ace 4tvk 4w63 4x3c 5bwb 5bwc 5dlp 5e2i 5e4j 5ehx 5ei5 5ih7

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