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(-) Description

Title :  CRYSTAL STRUCTURE OF THE RNA-HELICASE PRP43 FROM CHAETOMIUM THERMOPHILUM BOUND TO ADP
 
Authors :  M. J. Tauchert, R. Ficner
Date :  03 Aug 15  (Deposition) - 10 Feb 16  (Release) - 27 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.92
Chains :  Asym./Biol. Unit :  A
Keywords :  Spliceosome, Rna-Helicase, Deah-Box Protein, Dhx15, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Tauchert, J. B. Fourmann, H. Christian, R. Luhrmann, R. Ficner
Structural And Functional Analysis Of The Rna Helicase Prp4 From The Thermophilic Eukaryote Chaetomium Thermophilum.
Acta Crystallogr. , Sect. F V. 72 112 2016
PubMed-ID: 26841761  |  Reference-DOI: 10.1107/S2053230X15024498

(-) Compounds

Molecule 1 - PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE PRP43
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PETM13
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 61-764
    Gene: CTHT_0005780
    Organism Scientific: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM 1495
    Organism Taxid: 759272
    Other Details: THE PROTEIN WAS EXPRESSED WITH 2 ADDITIONAL N-TERMINAL AMINO ACIDS (MA) AND A C-TERMINAL STREP-TAG (WSHPQFEK).
    Strain: DSM 1495 / CBS 144.50 / IMI 039719

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2DMS9Ligand/IonDIMETHYL SULFOXIDE
3MG1Ligand/IonMAGNESIUM ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:121 , GLY A:122 , SER A:123 , GLY A:124 , LYS A:125 , THR A:126 , THR A:127 , SER A:158 , ARG A:162 , PHE A:360 , ASP A:391 , ARG A:435 , MG A:802 , HOH A:901 , HOH A:903 , HOH A:904binding site for residue ADP A 801
02AC2SOFTWARETHR A:126 , ASP A:218 , GLU A:219 , SER A:387 , ADP A:801 , HOH A:901 , HOH A:902 , HOH A:903 , HOH A:904binding site for residue MG A 802
03AC3SOFTWAREARG A:654 , TYR A:697 , ARG A:720binding site for residue DMS A 803
04AC4SOFTWAREGLU A:502 , ALA A:530 , GLY A:660 , MET A:663binding site for residue DMS A 805
05AC5SOFTWAREGLN A:711binding site for residue DMS A 806
06AC6SOFTWAREVAL A:556 , ASN A:703binding site for residue DMS A 807
07AC7SOFTWARESER A:614 , TYR A:615 , ARG A:616binding site for residue DMS A 808
08AC8SOFTWARETRP A:560 , LYS A:574 , SER A:690binding site for residue DMS A 809
09AC9SOFTWAREPRO A:399 , GLY A:400 , PHE A:401 , PRO A:420 , TYR A:445 , GLU A:453binding site for residue DMS A 810
10AD1SOFTWARETYR A:505 , PRO A:729 , VAL A:730 , TYR A:731binding site for residue DMS A 811

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D0U)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D0U)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D0U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D0U)

(-) Exons   (0, 0)

(no "Exon" information available for 5D0U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:705
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.........hhhhhhhhhhh......eeeeee.hhhhhhhhhhhhhhhh.......eeeee..eee......eeeeehhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhhhhhhh......eeeeee....hhhhhhhh....eee.......eeeee......hhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhh.............eeeeee.hhhhhh.....eeeeee..eeeeeeee....eeeeeeee.hhhhhhhhhhh......eeeee..hhhhhhhhh.....hhhhhh.hhhhhhhhhhhh..hhhhh......hhhhhhhhhhhhhhh.........hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh..eeee......eeee.....eeee...........eee..eeee...eeee..ee.hhhhhhhhh....hhhhh..hhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d0u A  61 TTAKQAEAVEDSDINPWTGQRHSERYFKILKARRKLPVNKQRQEFLDLYHNNQILVFVGETGSGKTTQIPQYVLYDELPHQTGKLIACTQPRRVAAMSVAQRVADELDVKLGEEVGYSIRFENKTSSKTLLKYMTDGQLLREAMHDRDMSRYSCIILDEAHERTLATDILMALLKQLSERRKDLKIIVMSATLDAQKFQSYFFNAPLLAVPGRTHPVEIFYTPEAERDYVEAAIRTVLQIHACEPEGDILLFLTGEEEIEDACRRISLEVDEMIRESDAGPMSVYPLYGTLPPHQQQRIFEKAPQPFRPGGRPGRKCIVATNIAETSLTIDGIVYVVDPGFSKQKIYNPRTRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFKKELIEQTYPEILRSNLSNTVLELKKLGVEDLVHFDLMDPPAPETMMRALEELNYLACLDDDGELTPLGNLASEFPLDPALAVMLISSPEFYCSNEILSITSLLSVPQIWVRPANARKRADEMKAQFAHPDGDHLTLLNAYHAYKGAEARGEDMKKWCHEHFLSYRHLSSADNVRAQLKKIMETHGIELVSTPFHDKNYYTNIRRALLAGFFMQVAMRESSNSKVYKTVKDEQLVLIHPSTTVTTPYEWVVYNEFVLTTKQYVRTVTNIRPEWLLEIAPVYYDLSTFQKGEIKNALTRVAEKIRRQQAMKASKAW 765
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D0U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D0U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D0U)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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        G0RY84_CHATD | G0RY84: 5lta 5ltj 5ltk

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