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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE PRP43-ADP-BEF3 COMPLEX (IN ORTHORHOMBIC SPACE GROUP)

Authors :   M. J. Tauchert, R. Ficner

Date :   06 Sep 16 (Deposition) - 25 Jan 17 (Release) - 25 Jan 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.78

Chains :   Asym./Biol. Unit : A

Keywords :   Spliceosome, Rna Helicase, Deah-Box Protein, Dhx15, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. J. Tauchert, J. B. Fourmann, R. Luhrmann, R. Ficner
Structural Insights Into The Mechanism Of The Deah-Box Rna Helicase Prp43.
Elife V. 6 2017
PubMed-ID: 28092261 | Reference-DOI: 10.7554/ELIFE.21510

Molecule 1 - PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE PRP43
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	ROSETTA 2
	Expression System Vector	:	PETM-13
	Expression System Vector Type	:	PLASMID
	Gene	:	CTHT_0005780
	Organism Scientific	:	CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM 1495
	Organism Taxid	:	759272
	Other Details	:	THE PROTEIN WAS EXPRESSED WITH 2 ADDITIONAL N-TERMINAL AMINO ACIDS (MA) AND A C-TERMINAL STREP-TAG (WSHPQFEK).

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (7, 16)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	BEF	1	Ligand/Ion	BERYLLIUM TRIFLUORIDE ION
3	CL	4	Ligand/Ion	CHLORIDE ION
4	MG	1	Ligand/Ion	MAGNESIUM ION
5	MPD	7	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
6	MRD	1	Ligand/Ion	(4R)-2-METHYLPENTANE-2,4-DIOL
7	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:126 , GLU A:219 , ADP A:801 , BEF A:802 , HOH A:918 , HOH A:961 , HOH A:1051	binding site for residue MG A 803
02	AC2	SOFTWARE	TYR A:445 , GLU A:453 , HOH A:1388	binding site for residue MPD A 804
03	AC3	SOFTWARE	ARG A:152 , GLU A:222 , ASN A:382 , GLU A:385 , THR A:458 , ARG A:464 , SO4 A:812 , HOH A:965 , HOH A:1206	binding site for residue MPD A 805
04	AC4	SOFTWARE	ARG A:625	binding site for residue MPD A 806
05	AC5	SOFTWARE	GLY A:370 , HOH A:939 , HOH A:1059	binding site for residue MPD A 807
06	AC6	SOFTWARE	LYS A:710 , GLN A:711	binding site for residue MPD A 808
07	AC7	SOFTWARE	GLU A:502 , PHE A:661 , MET A:663 , GLN A:664 , LYS A:680 , HOH A:1019	binding site for residue MPD A 809
08	AC8	SOFTWARE	LEU A:518	binding site for residue MPD A 810
09	AC9	SOFTWARE	TYR A:135 , PRO A:139 , HOH A:947	binding site for residue MRD A 811
10	AD1	SOFTWARE	GLN A:404 , LYS A:405 , ARG A:464 , MPD A:805 , HOH A:1025	binding site for residue SO4 A 812
11	AD2	SOFTWARE	ARG A:153 , ARG A:180 , THR A:195 , ARG A:201	binding site for residue CL A 813
12	AD3	SOFTWARE	GLY A:349 , THR A:381	binding site for residue CL A 815
13	AD4	SOFTWARE	ARG A:153 , HOH A:1481	binding site for residue CL A 816
14	AD5	SOFTWARE	GLU A:120 , THR A:121 , GLY A:122 , SER A:123 , GLY A:124 , LYS A:125 , THR A:126 , THR A:127 , ARG A:162 , GLU A:219 , SER A:387 , THR A:389 , ARG A:432 , ARG A:435 , THR A:436 , MG A:803 , HOH A:918 , HOH A:928 , HOH A:961 , HOH A:969 , HOH A:980 , HOH A:1017 , HOH A:1051 , HOH A:1092 , HOH A:1207 , HOH A:1242 , HOH A:1266 , HOH A:1371	binding site for residues ADP A 801 and BEF A 802

(no "SS Bond" information available for 5LTJ)

(no "Cis Peptide Bond" information available for 5LTJ)

(no "SAP(SNP)/Variant" information available for 5LTJ)

(no "PROSITE Motif" information available for 5LTJ)

(no "Exon" information available for 5LTJ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:703
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhhh......eeeee..eee......eeeeehhhhhhhhhhh.....eeeeeee.hhhhhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhh....eeee......eeeee......hhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhh.............eeeeee.hhhh.......eeeeee..eeeeeeee....eeeeeeee.hhhhhhhhhh.......eeeee..hhhhhhhhh.....hhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh.........hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh..eeee.......eee.....eeee...........eeeeeeeee...eeeeeeee.hhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ltj A  60 ATTAKQAEAVEDSDINPWTGQRHSERYFKILKARRKLPVNKQRQEFLDLYHNNQILVFVGETGSGKTTQIPQYVLYDELPHQTGKLIACTQPRRVAAMSVAQRVADELDVKLGEEVGYSIRFENKTSSKTLLKYMTDGQLLREAMHDRDMSRYSCIILDEAHERTLATDILMALLKQLSERRKDLKIIVMSATLDAQKFQSYFFNAPLLAVPGRTHPVEIFYTPEAERDYVEAAIRTVLQIHACEPEGDILLFLTGEEEIEDACRRISLEVDEMIRESDAGPMSVYPLYGTLPPHQQQRIFEKAPQPFRPGGRPGRKCIVATNIAETSLTIDGIVYVVDPGFSKQKIYNPRTRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFKKELIEQTYPEILRSNLSNTVLELKKLGVEDLVHFDLMDPPAPETMMRALEELNYLACLDDDGELTPLGNLASEFPLDPALAVMLISSPEFYCSNEILSITSLLSVPQIWVRPANARKRADEMKAQFAHPDGDHLTLLNAYHAYKGAEARGEDMKKWCHEHFLSYRHLSSADNVRAQLKKIMETHGIELVSTPFHDKNYYTNIRRALLAGFFMQVAMRESSNSKVYKTVKDEQLVLIHPSTTVTTPYEWVVYNEFVLTTKQYVRTVTNIRPEWLLEIAPVYYDLSTFQKGEIKNALTRVAEKIRRQQAMKAS 762
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5LTJ)

(no "CATH Domain" information available for 5LTJ)

(no "Pfam Domain" information available for 5LTJ)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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(no "Cis Peptide Bonds" information available for 5ltj)

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	G0RY84_CHATD \| G0RY84	:	5d0u 5lta 5ltk

5lta	5LTA IS THE SAME MOLECULE BUT CONTAINS AN ADDITIONAL U7-RNA

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 16)

Sites (14, 14)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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