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(-) Description

Title :  SELENOMETHIONINE BT4246
 
Authors :  N. M. Koropatkin
Date :  15 Jul 15  (Deposition) - 12 Oct 16  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.84
Chains :  Asym./Biol. Unit :  A
Keywords :  Susd Homologue, Tetra-Trico Peptide Repeat (Tpr), Mucin-Binding Protein, Microbiota (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. A. Ndeh, S. Nakjang, K. J. Kwiatkowski, N. M. Koropatkin, R. P. Hirt, D. N. Bolam
Mechanistic Insight Into Mucin Degradation By The Human Gut Microbiota Reveals Targeting Of The Glycoprotein Core
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUSD HOMOLOG
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-28A
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA PLYSS
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 26-642
    Gene: BT_4246
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON VPI-5482
    Organism Taxid: 226186

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric/Biological Unit (3, 12)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2EDO3Ligand/Ion1,2-ETHANEDIOL
3MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:241 , ASP A:312 , GLU A:617 , ASN A:618 , ARG A:619 , GLY A:641 , HOH A:847binding site for residue EDO A 701
2AC2SOFTWAREPRO A:63 , ARG A:156 , ARG A:225 , LEU A:502 , GLY A:568 , PHE A:572 , HOH A:924 , HOH A:976 , HOH A:989 , HOH A:1193binding site for residue EDO A 702
3AC3SOFTWAREPRO A:233 , ASN A:236 , GLY A:237 , SER A:238 , TYR A:263 , HOH A:951 , HOH A:1045binding site for residue EDO A 703
4AC4SOFTWARESER A:331 , ASP A:481 , THR A:496 , HOH A:867 , HOH A:955 , HOH A:1107 , HOH A:1124binding site for residue CA A 704

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CK1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CK1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CK1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CK1)

(-) Exons   (0, 0)

(no "Exon" information available for 5CK1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:584
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh..................ee.hhhhhhh.hhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhh....hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh............................hhhhhhhhhhhhhhhhhhhh..........hhhhhh............hhhhhhhhhhhhhhhhhh..hhhhh...eeeee............eeee.....eee.....eehhhhhhhh...............hhhhh............hhhhh..hhhhhhheee...eeeeeee..eeee..............hhhhh.....eee........ee.....ee......eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh....hhhhhhhhhhhhhh....hhhhhhhhh.hhhhhhh....ee........hhhhhh..ee.......hhhhhh...hhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ck1 A  46 RALGFLYSCYGGVSTDLPSAYLGEINSTTDEYVLPYSWNTDGYWGAYAFNTASSTNQDWLWGTTYQYIGQCYLFLQKLENAIASDAEKEQWRAECQFLVAYYHFATLRRYGPIPITDSYPTSEYNGRFHFDYCVDWIANQLDEAAKVLPANRWGRATSTIAKAVKARLLLYAASPLWNGSFPYPNWQNENFETPGYGKALVSNTYDKSKWERALAACQEALTLATTSGDRELYDDDEYYSRQSLNLPFVPGVADVEDNKEFLKNVmKmRYAVSTRESEGNKEIIWGLSNQFDFYSRYPLRILKKSDGTWHAGYSGVSPTLYTFEHFYTANGKLPEKDLDFTPSSEWFESAGISSREDIIKLNVGREPRFYAWmAFDGGDYGTKFAAGSPLKLEmRNSEmHGYNPSLFNRDHSVTGFLTQKFVDPVTEFYTAGGSTSGTSAPTILFRLAELYLNVAECHAALGNTQEAIDALNPVRERAGIPKLTLADITNNmTIKDWVHNERFVELWNEGHRFFDVRRWAEGAKYFGANKREGLNAEVQSPTFEEFNKRTTVDAPYVWENRmYLNPVFYNEVYKNPQmVQAPGY 642
                                    55        65        75        85        95       105       115       125||     138       148       158       173       183       193       203 ||    218       228       238       248       258       268       278       288       298       308       318     | 328       338       348       358       368       378       388       398       408       418       428  |    438       448   |   458       468       478       488       498       508       518       528       538       548 |     558       568       578       588       598       608       618 |     628       638    
                                                                                                          126|                                  167|                             205|                                                                                                              324-MSE                                                                                                    431-MSE              452-MSE|                                                                                          550-MSE                                                               620-MSE         636-MSE  
                                                                                                           130                                   173                              211                                                                                                                326-MSE                                                                                                                            457-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CK1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CK1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CK1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5CK1)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q89ZX5_BACTN | Q89ZX5: 5cjz 5ck0

(-) Related Entries Specified in the PDB File

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