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(-) Description

Title :  BT4246
 
Authors :  N. M. Koropatkin
Date :  15 Jul 15  (Deposition) - 12 Oct 16  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Susd Homologue, Tetra-Trico Peptide Repeat (Tpr), Mucin-Binding Protein, Microbiota (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. A. Ndeh, S. Nakjang, K. J. Kwiatkowski, N. M. Koropatkin, R. P. Hirt, D. N. Bolam
Mechanistic Insight Into Mucin Degradation By The Human Gut Microbiota Reveals Targeting Of The Glycoprotein Core
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUSD HOMOLOG
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-28A
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA PLYSS
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 40-642
    Gene: BT_4246
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON VPI-5482
    Organism Taxid: 226186

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1K2Ligand/IonPOTASSIUM ION
2NI3Ligand/IonNICKEL (II) ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:204 , ARG A:205 , GLU A:334 , HOH A:1012 , HOH A:1020 , HOH A:1073binding site for residue K A 701
2AC2SOFTWAREPHE A:398 , THR A:399 , LYS A:418 , VAL A:421binding site for residue K A 702
3AC3SOFTWAREGLY A:237 , ASN A:261binding site for residue NI A 703
4AC4SOFTWAREVAL A:630 , ASN A:633 , PRO A:634 , MET A:636 , HOH A:1361 , HOH A:1404binding site for residue NI A 704
5AC5SOFTWAREPRO A:392 , GLU A:393 , ASP A:395 , PHE A:398 , THR A:399binding site for residue NI A 705

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CK0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CK0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CK0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CK0)

(-) Exons   (0, 0)

(no "Exon" information available for 5CK0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:603
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh..................ee.hhhhhhh.hhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhh....hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhh............................hhhhhhhhhhhhhhhhhhhh..........hhhhhh............hhhhhhhhhhhhhhhhhh..hhhhh...eeeee............eeee.....eee.....eehhhhhhhh...............hhhhh............hhhhh..hhhhhhheee...eeeeeee..eeee...........hhhhhh.......eee........ee.....ee......eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh....hhhhhhhhhhhhhh....hhhhhhhhh.hhhhhhh....ee........hhhhhh..ee.......hhhhhh...hhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ck0 A  40 AMSSPTRALGFLYSCYGGVSTDLPSAYLGEINSTTDEYVLPYSWNTDGYWGAYAFNTASSTNQDWLWGTTYQYIGQCYLFLQKLENAGSDIASDAEKEQWRAECQFLVAYYHFATLRRYGPIPITDSYIPMDTPTSEYNGRFHFDYCVDWIANQLDEAAKVLPANRTATNEWGRATSTIAKAVKARLLLYAASPLWNGSFPYPNWQNENFETPGYGKALVSNTYDKSKWERALAACQEALTLATTSGDRELYDDDEYYSRQSLNLPFVPGVADVEDNKEFLKNVMKMRYAVSTRESEGNKEIIWGLSNQFDFYSRYPLRILKKSDGTWHAGYSGVSPTLYTFEHFYTANGKLPEKDLDFTPSSEWFESAGISSREDIIKLNVGREPRFYAWMAFDGGDYGTKFAAGSPLKLEMRNSEMHGYNPSLFNRDHSVTGFLTQKFVDPVTEFYTAGGSTSGTSAPTILFRLAELYLNVAECHAALGNTQEAIDALNPVRERAGIPKLTLADITNNMTIKDWVHNERFVELWNEGHRFFDVRRWAEGAKYFGANKREGLNAEVQSPTFEEFNKRTTVDAPYVWENRMYLNPVFYNEVYKNPQMVQAPGY 642
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CK0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CK0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CK0)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5CK0)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q89ZX5_BACTN | Q89ZX5: 5cjz 5ck1

(-) Related Entries Specified in the PDB File

5cjz BT4246 WITH GALACTOSE