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(-) Description

Title :  BT4246 WITH GALACTOSE
 
Authors :  N. M. Koropatkin
Date :  15 Jul 15  (Deposition) - 12 Oct 16  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Susd Homologue, Tetra-Trico Peptide Repeat (Tpr), Mucin-Binding Protein, Microbiota (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. A. Ndeh, S. Nakjang, K. J. Kwiatkowski, N. M. Koropatkin, R. P. Hirt, D. N. Bolam
Mechanistic Insight Into Mucin Degradation By The Human Gut Microbiota Reveals Targeting Of The Glycoprotein Core
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUSD HOMOLOG
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-28A
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA PLYSS
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 25-642
    Gene: BT_4246
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON VPI-5482
    Organism Taxid: 226186

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 10)

Asymmetric/Biological Unit (5, 10)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2CS3Ligand/IonCESIUM ION
3EDO3Ligand/Ion1,2-ETHANEDIOL
4GAL1Ligand/IonBETA-D-GALACTOSE
5K2Ligand/IonPOTASSIUM ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:204 , ARG A:205 , GLU A:334 , HOH A:1111 , HOH A:1376 , HOH A:1474binding site for residue K A 701
02AC2SOFTWAREPHE A:398 , THR A:399 , LYS A:418 , VAL A:421binding site for residue K A 702
03AC3SOFTWARESER A:331 , ASP A:481 , THR A:496 , HOH A:843 , HOH A:873 , HOH A:1144 , HOH A:1203binding site for residue CA A 703
04AC4SOFTWAREGLY A:237 , ASN A:261binding site for residue CS A 704
05AC5SOFTWAREVAL A:630 , ASN A:633 , PRO A:634 , MET A:636binding site for residue CS A 705
06AC6SOFTWAREPRO A:392 , GLU A:393 , ASP A:395 , PHE A:398 , THR A:399binding site for residue CS A 706
07AC7SOFTWARETYR A:66 , TRP A:83 , ASP A:86 , TYR A:371 , ARG A:467 , ASP A:468 , HOH A:1296binding site for residue GAL A 707
08AC8SOFTWAREHIS A:368 , ALA A:369binding site for residue EDO A 708
09AC9SOFTWARESER A:128 , ASP A:129 , SER A:132 , HOH A:801 , HOH A:825 , HOH A:858 , HOH A:900binding site for residue EDO A 709
10AD1SOFTWAREASN A:388 , LYS A:390 , ARG A:533 , PRO A:539 , LYS A:540 , ASP A:545binding site for residue EDO A 710

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CJZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CJZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CJZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CJZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5CJZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:603
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh..................ee.hhhhhhh.hhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhh....hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhh............................hhhhhhhhhhhhhhhhhhhh..........hhhhhh............hhhhhhhhhhhhhhhhhh..hhhhh...eeeee............eeee.....eee.....eehhhhhhhh...............hhhhh............hhhhh..hhhhhhheee...eeeeeee..eeee...........hhhhhh.......eee........ee.....ee......eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh....hhhhhhhhhhhhhh....hhhhhhhhh.hhhhhhh....ee........hhhhhh..ee.......hhhhhh...hhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cjz A  40 AMSSPTRALGFLYSCYGGVSTDLPSAYLGEINSTTDEYVLPYSWNTDGYWGAYAFNTASSTNQDWLWGTTYQYIGQCYLFLQKLENAGSDIASDAEKEQWRAECQFLVAYYHFATLRRYGPIPITDSYIPMDTPTSEYNGRFHFDYCVDWIANQLDEAAKVLPANRTATNEWGRATSTIAKAVKARLLLYAASPLWNGSFPYPNWQNENFETPGYGKALVSNTYDKSKWERALAACQEALTLATTSGDRELYDDDEYYSRQSLNLPFVPGVADVEDNKEFLKNVMKMRYAVSTRESEGNKEIIWGLSNQFDFYSRYPLRILKKSDGTWHAGYSGVSPTLYTFEHFYTANGKLPEKDLDFTPSSEWFESAGISSREDIIKLNVGREPRFYAWMAFDGGDYGTKFAAGSPLKLEMRNSEMHGYNPSLFNRDHSVTGFLTQKFVDPVTEFYTAGGSTSGTSAPTILFRLAELYLNVAECHAALGNTQEAIDALNPVRERAGIPKLTLADITNNMTIKDWVHNERFVELWNEGHRFFDVRRWAEGAKYFGANKREGLNAEVQSPTFEEFNKRTTVDAPYVWENRMYLNPVFYNEVYKNPQMVQAPGY 642
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CJZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CJZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CJZ)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5CJZ)

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 Related Entries

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UniProtKB/TrEMBL
        Q89ZX5_BACTN | Q89ZX5: 5ck0 5ck1

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