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(-) Description

Title :  STRUCTURE OF MYCOBACTERIUM THERMORESISTIBILE GLGE IN COMPLEX WITH MALTOSE AT 1.95A RESOLUTION
 
Authors :  V. Mendes, M. Blaszczyk, A. Maranha, N. Empadinhas, T. L. Blundell
Date :  09 Jul 15  (Deposition) - 09 Dec 15  (Release) - 09 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Glge, Maltose, Gh13, Maltosyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Mendes, M. Blaszczyk, A. Maranha, N. Empadinhas, T. L. Blundell
Structure Of Mycobacterium Thermoresistibile Glge Defines Novel Conformational States That Contribute To The Catalyti Mechanism.
Sci Rep V. 5 17144 2015
PubMed-ID: 26616850  |  Reference-DOI: 10.1038/SREP17144

(-) Compounds

Molecule 1 - ALPHA-1,4-GLUCAN:MALTOSE-1-PHOSPHATE MALTOSYLTRANSFERASE
    Chains: A, B
    EC Number: 2.4.99.16
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GLGE, KEK_12948
    Organism Scientific: MYCOBACTERIUM THERMORESISTIBILE ATCC 19527
    Organism Taxid: 1078020

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (9, 49)

Asymmetric/Biological Unit (9, 49)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2CL2Ligand/IonCHLORIDE ION
3EDO11Ligand/Ion1,2-ETHANEDIOL
4MAL2Ligand/IonMALTOSE
5NA19Ligand/IonSODIUM ION
6PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
7PG43Ligand/IonTETRAETHYLENE GLYCOL
8PGE2Ligand/IonTRIETHYLENE GLYCOL
9PO44Ligand/IonPHOSPHATE ION

(-) Sites  (48, 48)

Asymmetric Unit (48, 48)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:283 , ASN A:287 , SER A:298 , TRP A:300 , ALA A:301 , GLN A:343 , TYR A:376 , ASP A:378 , ARG A:411 , ASP A:413 , ASN A:414 , GLU A:442 , ASP A:498 , LYS A:552 , TYR A:553 , NA A:711 , HOH A:871 , HOH A:990binding site for residue MAL A 701
02AC2SOFTWAREGLY A:96 , HIS A:97 , THR A:98 , HIS A:103 , ARG A:694 , GLU A:696binding site for residue PO4 A 702
03AC3SOFTWAREPHE A:444 , THR A:445 , ARG A:446 , ARG A:449 , PEG A:723 , HOH A:910 , HOH A:911binding site for residue PO4 A 703
04AC4SOFTWARELEU A:150 , ARG A:154 , ARG A:179 , GLU A:630binding site for residue NA A 704
05AC5SOFTWARESER A:0 , GLY A:212 , GLU A:213binding site for residue NA A 705
06AC6SOFTWAREPRO A:497 , GLU A:546 , TYR A:547 , SER A:550 , LYS A:552binding site for residue NA A 706
07AC7SOFTWAREGLY A:507 , GLY A:508 , PRO A:509 , GLY A:510 , PRO A:625binding site for residue NA A 707
08AC8SOFTWAREGLN A:538 , LEU A:548 , NA A:714 , HOH A:1022binding site for residue NA A 708
09AC9SOFTWAREGLU A:27 , ARG A:225 , HOH A:971binding site for residue NA A 709
10AD1SOFTWAREASP A:9 , ALA A:33 , THR A:34 , GLU A:696binding site for residue NA A 710
11AD2SOFTWARETRP A:300 , PRO A:497 , ASP A:498 , MAL A:701 , HOH A:807binding site for residue NA A 711
12AD3SOFTWAREARG A:558 , PHE A:560 , HOH A:1014 , HOH A:1040 , HOH A:1280binding site for residue NA A 712
13AD4SOFTWARESER A:328 , 1PE A:716 , HOH A:964binding site for residue NA A 713
14AD5SOFTWAREGLU A:536 , TYR A:547 , ARG A:556 , NA A:708 , HOH A:953binding site for residue NA A 714
15AD6SOFTWARESER A:530 , HOH A:832 , HOH A:1014 , HOH A:1279binding site for residue CL A 715
16AD7SOFTWAREALA A:255 , GLU A:324 , SER A:328 , ASP A:331 , ARG A:352 , NA A:713binding site for residue 1PE A 716
17AD8SOFTWARETRP A:661 , TYR A:666 , ARG A:668 , HIS A:677binding site for residue PGE A 717
18AD9SOFTWAREASP A:323 , ARG A:400 , ILE A:403 , SER A:404 , HIS A:405 , GLU A:433 , HOH A:805binding site for residue PG4 A 718
19AE1SOFTWAREGLN A:538 , LEU A:548 , ASN A:549 , ARG A:556 , HOH A:826 , GLU B:243 , ARG B:245binding site for residue PG4 A 719
20AE2SOFTWAREHIS A:248 , ARG A:282 , GLY A:294 , VAL A:296 , GLU A:306 , GLN A:315 , HOH A:882binding site for residue PG4 A 720
21AE3SOFTWAREARG A:154 , THR A:632binding site for residue PEG A 721
22AE4SOFTWAREPRO A:95 , GLY A:96 , ASP A:100 , VAL A:101 , HOH A:813 , HOH A:894 , ARG B:446binding site for residue PEG A 722
23AE5SOFTWAREPHE A:444 , TRP A:467 , PO4 A:703 , HOH A:1088binding site for residue PEG A 723
24AE6SOFTWAREARG A:468binding site for residue EDO A 724
25AE7SOFTWAREARG A:446 , ASP B:100binding site for residue EDO A 726
26AE8SOFTWAREGLN A:11 , VAL A:13 , ASP A:486 , HOH A:833 , HOH A:1091binding site for residue EDO A 727
27AE9SOFTWAREHIS A:354 , GLU A:356 , ASP A:387 , HOH A:931binding site for residue EDO A 728
28AF1SOFTWARELEU A:382 , PHE A:384 , THR A:417 , PRO A:419 , HOH A:802 , HOH A:1013 , HOH A:1077 , GLU B:38 , HOH B:890binding site for residue EDO A 729
29AF2SOFTWAREGLN A:89 , THR A:107 , TRP A:114 , HOH A:801binding site for residue EDO A 730
30AF3SOFTWAREHIS A:103 , HIS A:105 , LEU A:690 , ARG A:694 , HOH A:845binding site for residue EDO A 731
31AF4SOFTWARELYS B:283 , ASN B:287 , SER B:298 , TRP B:300 , ALA B:301 , GLN B:343 , TYR B:376 , ASP B:378 , ARG B:411 , ASP B:413 , ASN B:414 , GLU B:442 , ASP B:498 , LYS B:552 , TYR B:553 , HOH B:856 , HOH B:965 , HOH B:1025binding site for residue MAL B 701
32AF5SOFTWAREGLY B:96 , HIS B:97 , THR B:98 , HIS B:103 , ARG B:694 , GLU B:696binding site for residue PO4 B 702
33AF6SOFTWARETHR B:445 , ARG B:446 , ARG B:449 , HOH B:950binding site for residue PO4 B 703
34AF7SOFTWAREGLY B:-1 , SER B:0 , GLY B:212 , GLU B:213 , HOH B:816binding site for residue NA B 704
35AF8SOFTWARETYR B:392 , PRO B:419 , ASN B:421binding site for residue NA B 705
36AF9SOFTWAREARG A:449 , HOH A:1015 , ARG B:37 , GLU B:38 , GLY B:39 , ASP B:41 , HOH B:1040binding site for residue NA B 706
37AG1SOFTWAREASP B:9 , GLN B:11 , ALA B:33 , THR B:34 , GLU B:696binding site for residue NA B 707
38AG2SOFTWAREVAL B:35 , VAL B:43 , ASP B:100 , HOH B:1040binding site for residue NA B 708
39AG3SOFTWAREALA B:520 , THR B:521 , GLY B:523 , PRO B:524 , LEU B:587 , LYS B:608binding site for residue NA B 709
40AG4SOFTWAREVAL B:28 , GLU B:589 , ARG B:591binding site for residue NA B 710
41AG5SOFTWAREARG B:225 , PHE B:226binding site for residue NA B 711
42AG6SOFTWARETYR B:56 , LEU B:59 , ILE B:427 , LEU B:456 , GLY B:457 , HOH B:894binding site for residue CL B 712
43AG7SOFTWARETRP A:240 , ASP A:241 , ASP A:559 , TRP B:240 , ASP B:241 , ASP B:559 , HOH B:1012 , HOH B:1130binding site for residue PGE B 713
44AG8SOFTWAREARG A:245 , GLN B:538 , LEU B:548 , ASN B:549 , ARG B:556 , HOH B:977binding site for residue 1PE B 714
45AG9SOFTWAREARG A:245 , LEU B:534 , GLU B:536 , ASN B:537 , GLN B:538binding site for residue PEG B 715
46AH1SOFTWARELYS B:471 , HIS B:596 , HIS B:597 , VAL B:598binding site for residue EDO B 716
47AH2SOFTWARELYS B:22 , GLU B:27 , ALA B:485 , ARG B:591 , HOH B:858 , HOH B:878binding site for residue EDO B 717
48AH3SOFTWAREALA B:45 , THR B:46 , PRO B:92 , MET B:93 , TRP B:121 , HOH B:848binding site for residue EDO B 718

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CGM)

(-) Cis Peptide Bonds  (3, 4)

Asymmetric/Biological Unit
No.Residues
1Gln A:11 -Pro A:12
2Gln B:11 -Pro B:12
3Pro B:372 -Pro B:373

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CGM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CGM)

(-) Exons   (0, 0)

(no "Exon" information available for 5CGM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:669
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeeee..hhhhh..eeee....eeeeeeee......eeeeeeeee...............eeee.ee.....eeeeee.....eeeeeeeeeeehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...eeeee...eeeeeehhhhh.eeeee.hhhhhh...........hhhhhhhhhhhhhhh...eeee............hhhhh.............................hhhhhhhhhhhhhhh..eeeeee..ee...hhhhhhhhhhh.................ee.....hhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhh...ee..hhhhh.hhhhhhhhhhhhhhh......eee.......hhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhh.......................hhhhhhhh...hhhhhhhhhhhhhhhhhhhh....ee.ee....eeeeeee......eeeeeee......eeeeee.hhhhhh......eeeee.....eeee..eeeeee......eeeee....hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cgm A  -1 GSVAGRIVIDDVQPVVSNGRYPAKAVVGEVVPVAATVWREGHDAVAATLVVRYHGTTYPDLADPPPGPQRLPMSPGHTPDVFHGHFTPDRVGLWTYRVDGWGDPIASWRHNVTAKLQGESELNNDLLVGARLLERAATGVPRELREALLEAAAALRAPGDPFTRAGAALSAEVSDLLAEYPLREFVTRGEQYGVWVDRPEARFSSWYEMFPRSTGGWDAEGRPVHGTFATAAEALPRIARMGFDVVYLPPIHPIGKVHRKGRNNSVTAAPGDVGSPWAIGSDEGGHDAVHPQLGTIEDFDEFVASARDLGLEVALDLALQCAPDHPWAREHPEWFTVLPDGSIAYAEKYQDIYPLNFDNDPAGIYQEVLRVVRFWISHGVNIFRVDNPHTKPPNFWAWLIGQIKNENPDVLFLSEAFTRPARLYGLAKLGFTQSYTYFTWRTSKWELTEFGQEIAAKADIARPNLFVNTPDILHESLQHGGPGMFAIRAVLAATMGPAWGVYSGYELFENQPVRPGSEEYLNSEKYELRPRDFESALARGESLEPFLTRLNEIRRLHPALRELRTIRFHHVDNDALLAYSKFDPGTGDTVLVVVTLNPFGAEEATLWLDMPELGMEPYDRFWVRDEITGEEYQWGQANYVRLDPAKAVAHVLNMPLIPADKRLQLLRRE 696
                                     8        18        28        38        48        58      ||90       100       110       120       130     ||143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363      |377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687         
                                                                                             65|                                             136|                                                                                                                                                                                                                                   370|                                                                                                                                                                                                                                                                                                                                 
                                                                                              88                                              140                                                                                                                                                                                                                                    375                                                                                                                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:667
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...eeeeee..hhhhh..eeee....eeeeeeee......eeeeeeeee..............eeee.ee.....eeeeee.....eeeeeeeeeeehhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhhhh...hhhhhhhhhhh...eeeeeeeeeeeeeehhhhh.eeeee.hhhhhh...........hhhhhhhhhhhhhhh...eeee............hhhhh.............................hhhhhhhhhhhhhhh..eeeeee..ee....hhhhhhhhhh..........eee..eee...ee.....hhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhh...ee..hhhhh.hhhhhhhhhhhhhhh......eee.......hhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhh.......................hhhhhhhh...hhhhhhhhhhhhhhhhhhhh....ee.ee....eeeeeee......eeeeeee......eeeeee..hhhhh......eeeee.....eeee..eeeeee......eeeee....hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cgm B  -1 GSVAGRIVIDDVQPVVSNGRYPAKAVVGEVVPVAATVWREGHDAVAATLVVRYHGTTYPDLADPPKPQRLPMSPGHTPDVFHGHFTPDRVGLWTYRVDGWGDPIASWRHNVTAKLLNNDLLVGARLLERAATGVPRELREALLEAAAALRAPGDPFTRAGAALSAEVSDLLAEYPLREFVTRGEQYGVWVDRPEARFSSWYEMFPRSTGGWDAEGRPVHGTFATAAEALPRIARMGFDVVYLPPIHPIGKVHRKGRNNSVTAAPGDVGSPWAIGSDEGGHDAVHPQLGTIEDFDEFVASARDLGLEVALDLALQCAPDHPWAREHPEWFTVLPDGSIAYAENPPKKYQDIYPLNFDNDPAGIYQEVLRVVRFWISHGVNIFRVDNPHTKPPNFWAWLIGQIKNENPDVLFLSEAFTRPARLYGLAKLGFTQSYTYFTWRTSKWELTEFGQEIAAKADIARPNLFVNTPDILHESLQHGGPGMFAIRAVLAATMGPAWGVYSGYELFENQPVRPGSEEYLNSEKYELRPRDFESALARGESLEPFLTRLNEIRRLHPALRELRTIRFHHVDNDALLAYSKFDPGTGDTVLVVVTLNPFGAEEATLWLDMPELGMEPYDRFWVRDEITGEEYQWGQANYVRLDPAKAVAHVLNMPLIPADKRLQLLRRE 696
                                     8        18        28        38        48        58    ||  91       101       111       121       131    || 149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       
                                                                                           63|                                              136|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
                                                                                            87                                               145
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

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(no "CATH Domain" information available for 5CGM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CGM)

(-) Gene Ontology  (9, 9)

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