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(-) Description

Title :  STRUCTURE OF MYCOBACTERIUM THERMORESISTIBILE GLGE IN COMPLEX WITH MALTOSE (COCRYSTALLISATION WITH MALTOSE-1-PHOSPHATE) AT 3.32A RESOLUTION
 
Authors :  V. Mendes, M. Blaszczyk, A. Maranha, N. Empadinhas, T. L. Blundell
Date :  13 Jul 15  (Deposition) - 09 Dec 15  (Release) - 09 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.32
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Glge, Maltose, Gh13, Maltosyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Mendes, M. Blaszczyk, A. Maranha, N. Empadinhas, T. L. Blundell
Structure Of Mycobacterium Thermoresistibile Glge Defines Novel Conformational States That Contribute To The Catalyti Mechanism.
Sci Rep V. 5 17144 2015
PubMed-ID: 26616850  |  Reference-DOI: 10.1038/SREP17144

(-) Compounds

Molecule 1 - ALPHA-1,4-GLUCAN:MALTOSE-1-PHOSPHATE MALTOSYLTRANSFERASE
    Chains: A, B
    EC Number: 2.4.99.16
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GLGE, KEK_12948
    Organism Scientific: MYCOBACTERIUM THERMORESISTIBILE ATCC 19527
    Organism Taxid: 1078020

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1MAL1Ligand/IonMALTOSE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS B:283 , ASN B:287 , SER B:298 , TRP B:300 , GLN B:343 , TYR B:376 , ASP B:378 , ILE B:379 , ARG B:411 , ASP B:413 , ASN B:414 , GLU B:442 , ASP B:498 , LYS B:552 , TYR B:553binding site for residue MAL B 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CIM)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Gln A:11 -Pro A:12
2Asp A:137 -Ala A:138
3Ala A:138 -Gly A:139
4Gln B:11 -Pro B:12
5Thr B:133 -Ala B:134
6Glu B:144 -Leu B:145
7Glu B:166 -Leu B:167
8Pro B:372 -Pro B:373

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CIM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CIM)

(-) Exons   (0, 0)

(no "Exon" information available for 5CIM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:636
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee...eeeeee..hhhhh..eeee....eeeeeeee......eeeeeeeee............eeeeeee.....eeeeee.....eeeeeeeeeeehhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeeeeehhhhh.eeeee.hhhhhhh..........hhhhhhhhhhhhhhh...eeee......hhhhh.....................hhhhhhhhhhhhhhh..eeeeee..ee...hhhhhhh...ee.....hhhhhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhh...eee.hhhh..hhhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhh.......................hhhhhhhhh..hhhhhhhhhhhhhhhhhhh.....ee.ee....eeeeeee......eeeeeee......eeeeee..hhhhh......eeeee.....eeee..eeeeee......eeeeee...hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5cim A   0 SVAGRIVIDDVQPVVSNGRYPAKAVVGEVVPVAATVWREGHDAVAATLVVRYHGTTYPDLADPPQRLPMSPGHTPDVFHGHFTPDRVGLWTYRVDGWGDPIASWRHNVTAKLDAGQGESELNNDLLVGARLLERAATGVPRELREALLEAAAALRAPGDPFTRAGAALSAEVSDLLAEYPLREFVTRGEQYGVWVDRPEARFSSWYEMFPRSTGGWDAEGRPVHGTFATAAEALPRIARMGFDVVYLPPIHRKGRNNSVTAAPGDVGSPWHDAVHPQLGTIEDFDEFVASARDLGLEVALDLALQCAPDHPWAREHPDIYPLNFDNDPAGIYQEVLRVVRFWISHGVNIFRVDNPHTKPPNFWAWLIGQIKNENPDVLFLSEAFTRPARLYGLAKLGFTQSYTYFTWRTSKWELTEFGQEIAAKADIARPNLFVNTPDILHESLQHGGPGMFAIRAVLAATMGPAWGVYSGYELFENQPVRPGSEEYLNSEKYELRPRDFESALARGESLEPFLTRLNEIRRLHPALRELRTIRFHHVDNDALLAYSKFDPGTGDTVLVVVTLNPFGAEEATLWLDMPELGMEPYDRFWVRDEITGEEYQWGQANYVRLDPAKAVAHVLNMPLIPADKRLQLLRRE 696
                                     9        19        29        39        49        59  ||    94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274||     290       300|      318       328       338       348      |380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690      
                                                                                         62|                                                                                                                                                                                        275|               300|                                           355|                                                                                                                                                                                                                                                                                                                              
                                                                                          88                                                                                                                                                                                         282                309                                            378                                                                                                                                                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:675
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...eeeeee..hhhhh..eeee....eeeeeeee......eeeeeeeeeee...................eeeeeee.....eeeeee.....eeeeeeeeeeehhhhhhhhhh...........hhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh...eeeee...eeeeeehhhhh.eeeee.hhhhhhh..........hhhhhhhhhhhhhhh...eeee............hhhhh.............................hhhhhhhhhhhhhhh..eeeeee..ee...hhhhhhhhhhh...........ee..ee....ee.....hhhhhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhh...eee.hhhhh.hhhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhhhhhh.eeeee.............................hhhhhhhhh..hhhhhhhhhhhhhhhhhhh.....ee.......eeeeeee......eeeeeee......eeeeee.hhhhhh......eeeee.....eeee..eeeeee......eeeeee...hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cim B   0 SVAGRIVIDDVQPVVSNGRYPAKAVVGEVVPVAATVWREGHDAVAATLVVRYHGTTYPDLADPPPGVPGAVKPQRLPMSPGHTPDVFHGHFTPDRVGLWTYRVDGWGDPIASWRHNVTAKLSELNNDLLVGARLLERAATGVPRELREALLEAAAALRAPGDPFTRAGAALSAEVSDLLAEYPLREFVTRGEQYGVWVDRPEARFSSWYEMFPRSTGGWDAEGRPVHGTFATAAEALPRIARMGFDVVYLPPIHPIGKVHRKGRNNSVTAAPGDVGSPWAIGSDEGGHDAVHPQLGTIEDFDEFVASARDLGLEVALDLALQCAPDHPWAREHPEWFTVLPDGSIAYAENPPKKYQDIYPLNFDNDPAGIYQEVLRVVRFWISHGVNIFRVDNPHTKPPNFWAWLIGQIKNENPDVLFLSEAFTRPARLYGLAKLGFTQSYTYFTWRTSKWELTEFGQEIAAKADIARPNLFVNTPDILHESLQHGGPGMFAIRAVLAATMGPAWGVYSGYELFENQPVRPGSEEYLNSEKYELRPRDFESALARGESLEPFLTRLNEIRRLHPALRELRTIRFHHVDNDALLAYSKFDPGTGDTVLVVVTLNPFGAEEATLWLDMPELGMEPYDRFWVRDEITGEEYQWGQANYVRLDPAKAVAHVLNMPLIPADKRLQLLRRE 696
                                     9        19        29        39        49        59        69|       95       105       115       125       135||     151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691     
                                                                                                69|                                               136|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
                                                                                                 86                                                143
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CIM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CIM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CIM)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:138 - Gly A:139   [ RasMol ]  
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    Gln A:11 - Pro A:12   [ RasMol ]  
    Gln B:11 - Pro B:12   [ RasMol ]  
    Glu B:144 - Leu B:145   [ RasMol ]  
    Glu B:166 - Leu B:167   [ RasMol ]  
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    Thr B:133 - Ala B:134   [ RasMol ]  
 

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