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(-) Description

Title :  CRYSTAL STRUCTURE OF THE NTD L199M OF DROSOPHILA OSKAR PROTEIN
 
Authors :  N. Yang, M. Hu, Z. Yu, M. Wang, R. Lehmann, R. M. Xu
Date :  03 Jul 15  (Deposition) - 02 Sep 15  (Release) - 30 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  3'-Utr, Dimerization, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Yang, Z. Yu, M. Hu, M. Wang, R. Lehmann, R. M. Xu
Structure Of Drosophila Oskar Reveals A Novel Rna Binding Protein
Proc. Natl. Acad. Sci. Usa V. 112 11541 2015
PubMed-ID: 26324911  |  Reference-DOI: 10.1073/PNAS.1515568112

(-) Compounds

Molecule 1 - MATERNAL EFFECT PROTEIN OSKAR
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 150-224
    Gene: OSK, CG10901
    Mutation: YES
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:195 , THR A:196 , ASP B:197 , HOH B:305binding site for residue GOL A 301
2AC2SOFTWAREALA A:162 , ILE A:163 , SER A:166 , HIS A:167 , GLU A:180binding site for residue GOL A 302
3AC3SOFTWARESER A:166 , HIS A:167 , ALA A:168 , GLN A:169 , ASN A:170binding site for residue GOL A 303
4AC4SOFTWAREASP F:193 , ASN F:194 , VAL F:195binding site for residue GOL F 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CD7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CD7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CD7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CD7)

(-) Exons   (0, 0)

(no "Exon" information available for 5CD7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:77
                                                                                                             
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh....eehhhhhhhhhhhhh.......hhhhhhh....eeeee.....eeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 5cd7 A 148 GSREEYPDIDSEVRAILLSHAQNGITISSIKSEYRKLTGNPFPLHDNVTDFmLTIPNVTAECSESGKRIFNLKASLK 224
                                   157       167       177       187       197 |     207       217       
                                                                             199-MSE                     


Chain B from PDB  Type:PROTEIN  Length:72
                                                                                                        
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh....hhhhhhhhhhhhhh.......hhhhhhhh...eeeee.....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 5cd7 B 150 REEYPDIDSEVRAILLSHAQNGITISSIKSEYRKLTGNPFPLHDNVTDFmLTIPNVTAECSESGKRIFNLKA 221
                                   159       169       179       189       199       209       219  
                                                                           199-MSE                  


Chain C from PDB  Type:PROTEIN  Length:75
                                                                                                           
               SCOP domains --------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..hhhhhhhhhhhhhh...eehhhhhhhhhhhhh.......hhhhhhhhh..eeeee.....eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                 5cd7 C 148 GSREEYPDIDSEVRAILLSHAQNGITISSIKSEYRKLTGNPFPLHDNVTDFmLTIPNVTAECSESGKRIFNLKAS 222
                                   157       167       177       187       197 |     207       217     
                                                                             199-MSE                   


Chain D from PDB  Type:PROTEIN  Length:73
                                                                                                         
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhh...eehhhhhhhhhhhhh.......hhhhhhh....eeeee.....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 5cd7 D 149 SREEYPDIDSEVRAILLSHAQNGITISSIKSEYRKLTGNPFPLHDNVTDFmLTIPNVTAECSESGKRIFNLKA 221
                                   158       168       178       188       198|      208       218   
                                                                            199-MSE                  


Chain E from PDB  Type:PROTEIN  Length:68
                                                                                                    
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.....hhhhhhhhhhhhhh.......hhhhhhh....eeeee.....eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 5cd7 E 154 PDIDSEVRAILLSHAQNGITISSIKSEYRKLTGNPFPLHDNVTDFmLTIPNVTAECSESGKRIFNLKA 221
                                   163       173       183       193     | 203       213        
                                                                       199-MSE                  


Chain F from PDB  Type:PROTEIN  Length:68
                                                                                                    
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh....hhhhhhhhhhhhhh.......hhhhhhhhh..eeeee.....eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 5cd7 F 155 DIDSEVRAILLSHAQNGITISSIKSEYRKLTGNPFPLHDNVTDFmLTIPNVTAECSESGKRIFNLKAS 222
                                   164       174       184       194    |  204       214        
                                                                      199-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CD7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CD7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CD7)

(-) Gene Ontology  (26, 26)

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  5cd7
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  OSKA_DROME | P25158
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OSKA_DROME | P25158: 5a48 5a49 5a4a 5cd8 5cd9 5nt7

(-) Related Entries Specified in the PDB File

5cd8 5cd9