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(-) Description

Title :  STRUCTURE OF THE LOTUS DOMAIN OF OSKAR IN COMPLEX WITH THE C-TERMINAL RECA-LIKE DOMAIN OF VASA
 
Authors :  M. Jeske, A. Ephrussi, C. W. Mueller
Date :  27 Apr 17  (Deposition) - 17 May 17  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Dead-Box Rna Helicase, Atpase, Rna Binding, Regulator, Stimulator, Germ Plasm, Nuage, Lotus, Hydrolase- Hydrolase Regulator Complex, Hydrolase-Hydrolase Regulator Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Jeske, C. W. Muller, A. Ephrussi
The Lotus Domain Is A Conserved Dead-Box Rna Helicase Regulator Essential For The Recruitment Of Vasa To The Germ Plasm And Nuage.
Genes Dev. V. 31 939 2017
PubMed-ID: 28536148  |  Reference-DOI: 10.1101/GAD.297051.117

(-) Compounds

Molecule 1 - ATP-DEPENDENT RNA HELICASE VASA, ISOFORM A
    Chains: B, D
    EC Number: 3.6.4.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: VAS, VASA, CG46283
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Other Details: THE N-TERMINAL RESIDUES GH (GLYCINE, HISTIDINE) STEM FROM THE TEV CLEAVAGE SITE
    Synonym: ANTIGEN MAB46F11
 
Molecule 2 - MATERNAL EFFECT PROTEIN OSKAR
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: OSK, CG10901
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Other Details: THE N-TERMINAL RESIDUES GPLGS STEM FROM THE 3C CLEAVAGE SITE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5NT7)

(-) Sites  (0, 0)

(no "Site" information available for 5NT7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5NT7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5NT7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5NT7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5NT7)

(-) Exons   (0, 0)

(no "Exon" information available for 5NT7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:92
                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.hhhhhhhhhhhhh.....hhhhhhhhhhhhhh.......hhhhhhh....eeeee.....eeeee.....hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 5nt7 A 146 YISVREEYPDIDSEVRAILLSHAQNGITISSIKSEYRKLTGNPFPLHDNVTDFLLTIPNVTAECSESGKRIFNLKASLKNGHLLDMVLNQKE 237
                                   155       165       175       185       195       205       215       225       235  


Chain B from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh....eeeeehhhhh........eeee.....hhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhh....hhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5nt7 B 465 VKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 623
                                   474       484       494       504       514       524       534       544       554       564       574     ||590       600       610       620   
                                                                                                                                             580|                                    
                                                                                                                                              587                                    


Chain C from PDB  Type:PROTEIN  Length:92
                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.hhhhhhhhhhhhh.....hhhhhhhhhhhhhh.......hhhhhhh....eeeee.....eeeee.....hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 5nt7 C 146 YISVREEYPDIDSEVRAILLSHAQNGITISSIKSEYRKLTGNPFPLHDNVTDFLLTIPNVTAECSESGKRIFNLKASLKNGHLLDMVLNQKE 237
                                   155       165       175       185       195       205       215       225       235  


Chain D from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh....eeeee.............eeee.....hhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhh....hhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5nt7 D 465 VKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 623
                                   474       484       494       504       514       524       534       544       554       564       574     ||590       600       610       620   
                                                                                                                                             580|                                    
                                                                                                                                              587
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5NT7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5NT7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5NT7)

(-) Gene Ontology  (37, 39)

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  VASA1_DROME | P09052
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OSKA_DROME | P25158: 5a48 5a49 5a4a 5cd7 5cd8 5cd9
        VASA1_DROME | P09052: 2db3 2ihs 3emw 3f2o

(-) Related Entries Specified in the PDB File

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