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(-) Description

Title :  IDENTIFICATION OF A NOVEL ALLOSTERIC BINDING SITE FOR RORGT INHIBITORS
 
Authors :  G. Parthasarathy, S. Soisson
Date :  18 Jun 15  (Deposition) - 16 Dec 15  (Release) - 16 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.77
Chains :  Asym./Biol. Unit :  A
Keywords :  Allosteric, Inhibitor, Transcription-Transcription Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Scheepstra, S. Leysen, G. C. Van Almen, J. R. Miller, J. Piesvaux, V. Kutilek, H. Van Eenennaam, H. Zhang, K. Barr, S. Nagpal, S. M. Soisson, M. Kornienko, K. Wiley, N. Elsen, S. Sharma, C. C. Correll, B. W. Trotter, M. Van Der Stelt, A. Oubrie, C. Ottmann, G. Parthasarathy, L. Brunsveld
Identification Of An Allosteric Binding Site For Ror Gamma Inhibition.
Nat Commun V. 6 8833 2015
PubMed-ID: 26640126  |  Reference-DOI: 10.1038/NCOMMS9833

(-) Compounds

Molecule 1 - NUCLEAR RECEPTOR ROR-GAMMA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: LIGAND-BINDING RESIDUES 267-507
    Gene: RORC, NR1F3, RORG, RZRG
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NUCLEAR RECEPTOR RZR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP F MEMBER 3,RAR-RELATED ORPHAN RECEPTOR C,RETINOID-RELATED ORPHAN RECEPTOR-GAMMA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric/Biological Unit (3, 10)
No.NameCountTypeFull Name
14Y61Ligand/Ion(1S)-4-{1-[2-CHLORO-6-(TRIFLUOROMETHYL)BENZOYL]-4-FLUORO-1H-INDAZOL-3-YL}-1-METHYLCYCLOHEX-3-ENE-1-CARBOXYLIC ACID
2GOL7Ligand/IonGLYCEROL
3SO42Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETRP A:317 , LEU A:324 , THR A:325 , ILE A:328 , GLN A:329 , LEU A:353 , LYS A:354 , MET A:358 , LEU A:483 , GLN A:484 , GLN A:487 , VAL A:494 , GLN A:495 , ALA A:496 , ALA A:497 , PHE A:498 , LEU A:501 , TYR A:502 , LEU A:505 , PHE A:506binding site for residue 4Y6 A 601
02AC2SOFTWAREGLN A:349 , ILE A:350 , LEU A:353binding site for residue SO4 A 602
03AC3SOFTWAREGLN A:434 , GLU A:435 , LYS A:436 , ARG A:437binding site for residue SO4 A 603
04AC4SOFTWAREGLU A:271 , VAL A:274 , TRP A:314 , HIS A:453 , LYS A:456 , LEU A:489binding site for residue GOL A 604
05AC5SOFTWAREGLU A:304 , GLY A:307 , TYR A:308 , LYS A:311binding site for residue GOL A 605
06AC6SOFTWARELYS A:354 , CYS A:476binding site for residue GOL A 606
07AC7SOFTWAREILE A:397 , ILE A:400binding site for residue GOL A 607
08AC8SOFTWAREGLN A:441 , TYR A:444 , GLN A:460binding site for residue GOL A 608
09AC9SOFTWAREHIS A:323 , PHE A:377 , PHE A:378 , GLU A:379 , GLY A:380binding site for residue GOL A 609
10AD1SOFTWAREGLU A:318 , HIS A:322 , ILE A:492 , VAL A:493 , HOH A:758binding site for residue GOL A 610

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C4T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5C4T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C4T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C4T)

(-) Exons   (0, 0)

(no "Exon" information available for 5C4T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:241
                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh...ee....eeee..eeehhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c4t A 267 LTEIEHLVQSVCKSYRETCQLRLEDLLRQRSNIFSREEVTGYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLHKTHRQSILAKLPPKGKLRSLCSQHVERLQIFQHLHPIVVQAAFPPLYKELFS 507
                                   276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C4T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C4T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C4T)

(-) Gene Ontology  (37, 37)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  RORG_HUMAN | P51449
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RORG_HUMAN | P51449: 3b0w 3kyt 3l0j 3l0l 4nb6 4nie 4qm0 4s14 4wlb 4wpf 4wqp 4xt9 4ymq 4ypq 4zjr 4zjw 4zom 5aph 5apj 5apk 5ayg 5c4o 5c4s 5c4u 5ejv 5eth 5g42 5g43 5g44 5g45 5g46 5ixk 5iz0 5k38 5k3l 5k3m 5k3n 5k6e 5k74 5lwp 5m96 5nti 5ntk 5ntn 5ntp 5ntq 5ntw 5nu1 5ufo 5ufr 5uhi 5vb3 5vb5 5vb6 5vb7 5x8q

(-) Related Entries Specified in the PDB File

5c4o 5c4s 5c4u