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(-) Description

Title :  STRUCTURE OF THE BETA-KETOACYL REDUCTASE DOMAIN OF HUMAN FATTY ACID SYNTHASE BOUND TO A SPIRO-IMIDAZOLONE INHIBITOR
 
Authors :  C. Schubert, C. M. Milligan, K. Vo, B. Grasberger
Date :  17 Jun 15  (Deposition) - 22 Jun 16  (Release) - 22 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  C  (1x)
Keywords :  Fatty Acid Synthase, Inhibitor, Beta-Ketoacyl Reductase, Cancer, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Lu, C. Schubert, M. D. Cummings, G. Bignan, P. Connolly, K. Smans, D. Ludovici, M. Parker, C. Meyer, C. Rocaboy, R. Alexander, B. Grasberger, S. De Breucker, N. Esser, E. Fraiponts, R. Gilissen, B. Janssens, D. Peeters, L. Van Nuffel, P. Vermeulen, J. Bischoff, L. Meerpoel
Design And Synthesis Of A Series Of Bioavailable Fatty Acid Synthase (Fasn) Kr Domain Inhibitors For Cancer Therapy
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FATTY ACID SYNTHASE
    Chains: A, C
    EC Number: 2.3.1.85, 2.3.1.38, 2.3.1.39, 2.3.1.41, 1.1.1.100, 4.2.1.59, 1.3.1.39, 3.1.2.14
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: BACMAGIC 2
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: PSIME/PSIKR/KR TRI-DOMAIN (UNP RESIDUES 1108-1523, 1877- 2122)
    Gene: FASN, FAS
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AC
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric Unit (4, 8)
No.NameCountTypeFull Name
14XN2Ligand/Ion6-{[(3R)-1-(CYCLOPROPYLCARBONYL)PYRROLIDIN-3-YL]METHYL}-5-[4-(1-METHYL-1H-INDAZOL-5-YL)PHENYL]-4,6-DIAZASPIRO[2.4]HEPT-4-EN-7-ONE
2CL3Ligand/IonCHLORIDE ION
3GOL1Ligand/IonGLYCEROL
4NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
14XN1Ligand/Ion6-{[(3R)-1-(CYCLOPROPYLCARBONYL)PYRROLIDIN-3-YL]METHYL}-5-[4-(1-METHYL-1H-INDAZOL-5-YL)PHENYL]-4,6-DIAZASPIRO[2.4]HEPT-4-EN-7-ONE
2CL-1Ligand/IonCHLORIDE ION
3GOL-1Ligand/IonGLYCEROL
4NDP1Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
14XN1Ligand/Ion6-{[(3R)-1-(CYCLOPROPYLCARBONYL)PYRROLIDIN-3-YL]METHYL}-5-[4-(1-METHYL-1H-INDAZOL-5-YL)PHENYL]-4,6-DIAZASPIRO[2.4]HEPT-4-EN-7-ONE
2CL-1Ligand/IonCHLORIDE ION
3GOL1Ligand/IonGLYCEROL
4NDP1Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:1891 , GLY A:1894 , GLY A:1895 , PHE A:1896 , THR A:1915 , SER A:1916 , ARG A:1917 , ASN A:1945 , LEU A:1971 , ALA A:1972 , VAL A:1973 , VAL A:1974 , LYS A:1995 , PHE A:2019 , SER A:2020 , SER A:2021 , TYR A:2034 , TRP A:2060 , GLY A:2061 , ILE A:2063 , GLY A:2067 , ILE A:2068 , LEU A:2069 , 4XN A:2202 , HOH A:2318 , HOH A:2364binding site for residue NDP A 2201
2AC2SOFTWAREHIS A:1263 , PRO A:1264 , SER A:2021 , SER A:2023 , ARG A:2026 , GLY A:2027 , ASN A:2028 , TYR A:2034 , VAL A:2080 , SER A:2081 , PHE A:2109 , NDP A:2201 , HOH A:2358binding site for residue 4XN A 2202
3AC3SOFTWAREARG A:1461 , ARG A:1470 , HOH A:2339binding site for residue CL A 2203
4AC4SOFTWAREGLY C:1891 , GLY C:1894 , GLY C:1895 , PHE C:1896 , THR C:1915 , SER C:1916 , ARG C:1917 , SER C:1918 , ASN C:1945 , LEU C:1971 , ALA C:1972 , VAL C:1973 , LYS C:1995 , PHE C:2019 , SER C:2020 , SER C:2021 , TYR C:2034 , TRP C:2060 , GLY C:2061 , ILE C:2063 , GLY C:2067 , ILE C:2068 , 4XN C:2203 , HOH C:2321 , HOH C:2343 , HOH C:2350 , HOH C:2358binding site for residue NDP C 2201
5AC5SOFTWAREGLU C:1124 , PRO C:1222 , ALA C:1223 , PHE C:1517binding site for residue GOL C 2202
6AC6SOFTWAREHIS C:1263 , PRO C:1264 , SER C:2021 , VAL C:2022 , SER C:2023 , ARG C:2026 , GLY C:2027 , ASN C:2028 , TYR C:2034 , LEU C:2069 , VAL C:2080 , SER C:2081 , PHE C:2109 , NDP C:2201binding site for residue 4XN C 2203
7AC7SOFTWAREASN C:1234 , ARG C:1461binding site for residue CL C 2204
8AC8SOFTWAREHOH C:2422 , HOH C:2424binding site for residue CL C 2205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C37)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Thr A:2072 -Met A:2073

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C37)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C37)

(-) Exons   (0, 0)

(no "Exon" information available for 5C37)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:632
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee.eeeee...hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhh.....eeeeeeee.hhhhhh.hhhhhhhh..eeee.......hhhhh.eeeeeee.......hhhhhhhhhhhheeeeeeeeeeee...hhhhhhhhhhhh.....hhhhhhhhhhhh..eeeeeeee...eeeeeee........eeee......hhhhhhhhhhhh......eeeee......hhhhhhhhhh...hhh.eeeeee...............hhhhhhhhhhh..eeeee..eeeeeeeee.............eeeee...hhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhh.eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeehhhhh....hhhhhhhhhhhhhhhhhhhhh....eeeee.......hhhhh..........ee..hhhhhhhhhhhhhh....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5c37 A 1108 EQQVPILEKFCFTPHTEEGCLSERAALQEELQLCKGLVQALQTKAQIPRDPSQQELPRLLSAACRLQLNGNLQLELAQVLAQERPKLPEDPLLSGLLDSPALKACLDTAVENMPSLKMKVVEVLAGHGHLYSRIPGLLSPHPLLQLSYTATDRHPQALEAAQAELQQHDVAQGQWDPADPAPSALGSADLLVCNCAVAALGDPASALSNMVAALREGGFLLLHTLLRGHPLGDIVAFLTSGQGILSQDAWESLFSRVSLRLVGLKKSFYGSTLFLCRRPTPQDSPIFLPVDDTSFRWVESLKGILADEDSSRPVWLKAINCATSGVVGLVNCLRREPGGNRLRCVLLSNLSSTSHVPEVDPGSAELQKVLQGDLVMNVYRDGAWGAFRHFLLEEDSKTGCPAHKSYIIAGGLGGFGLELAQWLIQRGVQKLVLTSRSGIRTGYQAKQVRRWRRQGVQVQVSTSNISSLEGARGLIAEAAQLGPVGGVFNLAVVLRDGLLENQTPEFFQDVCKPKYSGTLNLDRVTREACPELDYFVVFSSVSCGRGNAGQSNYGFANSAMERICEKRRHEGLPGLAVQWGAIGDVGILVETMSTNDTIVSGTLPQRMASCLEVLDLFLNQPHMVLSSFVLAE 2113
                                  1117      1127      1137      1147   || 1172      1182      1192      1202      1212      1222      1232      1242      1252      1262      1272      1282      1292      1302      1312      1322      1332      1342      1352      1362|     1377      1387      1397      1407      1417      1427      1437      1447      1457      1467      1477      1487      1497      1507      1517    ||1881      1891      1901      1911      1921      1931      1941      1951      1961      1971      1981      1991      2001      2011      2021      2031      2041      2051      2061      2071      2081      2091      2101      2111  
                                                                    1151|                                                                                                                                                                                               1362|                                                                                                                                                      1522|                                                                                                                                                                                                                                            
                                                                     1167                                                                                                                                                                                                1368                                                                                                                                                       1877                                                                                                                                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:624
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeee.eeeee...hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh...hhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhh.....eeeeeeee.hhhhhh.hhhhhhhh..eeee.......hhhhh.eeeeeee.......hhhhhhhhhhhheeeeeeeeeeee...hhhhhhhhhh......hhhhhhhhhhhh..eeeeeeee...eeeeeee........eeee......hhhhhhhhhhhh......eeeee......hhhhhhhhhh...hhh.eeeeee...............hhhhhhhhhhh..eeeee..eeeeeeeee.............eeeee...hhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhh.eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeehhhhh....hhhhhhhhhhhhhhhhhhhhh....eeeee................ee..hhhhhhhhhhhhh.....eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5c37 C 1108 EQQVPILEKFCFTPHTEEGCLSERAALQEELQLCKGLVQALGAQIPRDPSQQELPRLLSAACRLQLNGNLQLELAQVLAQERPKLPEDPLLSGLLDSPALKACLDTAVENMPSLKMKVVEVLAGHGHLYSRIPGLLSPHPLLQLSYTATDRHPQALEAAQAELQQHDVAQGQWDPADPAPSALGSADLLVCNCAVAALGDPASALSNMVAALREGGFLLLHTLLRGHPLGDIVAFLTGQGILSQDAWESLFSRVSLRLVGLKKSFYGSTLFLCRRPTPQDSPIFLPVDDTSFRWVESLKGILADEDSSRPVWLKAINCATSGVVGLVNCLRREPGGNRLRCVLLSNLSSTSHVPEVDPGSAELQKVLQGDLVMNVYRDGAWGAFRHFLLEEDSKTGCPAHKSYIIAGGLGGFGLELAQWLIQRGVQKLVLTSRSGIRTGYQAKQVRRWRRQGVQVQVSTSNISSLEGARGLIAEAAQLGPVGGVFNLAVVLRDGLLENQTPEFFQDVCKPKYSGTLNLDRVTREACPELDYFVVFSSVSCGRGNAGQSNYGFANSAMERICEKRRHEGLPGLAVQWGAIGDVGILVETIVSGTLPQRMASCLEVLDLFLNQPHMVLSSFVLAEK 2114
                                  1117      1127      1137      1147||    1174      1184      1194      1204      1214      1224      1234      1244      1254      1264      1274      1284      1294      1304      1314      1324      1334      1344      1354      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480      1490      1500      1510      1520 ||   1884      1894      1904      1914      1924      1934      1944      1954      1964      1974      1984      1994      2004      2014      2024      2034      2044      2054      2064      2080      2090      2100      2110    
                                                                 1148|                                                                                                                                                                                               1361|                                                                                                                                                      1522|                                                                                                                                                                                              2071|                                    
                                                                  1166                                                                                                                                                                                                1368                                                                                                                                                       1877                                                                                                                                                                                               2078
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C37)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C37)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C37)

(-) Gene Ontology  (48, 48)

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  5c37
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  FAS_HUMAN | P49327
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FAS_HUMAN | P49327: 1xkt 2cg5 2jfd 2jfk 2px6 3hhd 3tjm 4piv 4w82 4w9n 4z49

(-) Related Entries Specified in the PDB File

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