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(-) Description

Title :  CRYSTAL STRUCTURE OF BRUTON AGAMMAGLOBULINEMIA TYROSINE KINASE COMPLEXED WITH BMS-824171 AKA 6-[(3R)-3-(4-TERT-BU TYLBENZAMIDO) PIPERIDIN-1-YL]-2-{[4-(MORPHOLINE-4-CARBONYL) PHENYL]AMINO}PYRIDINE-3-CARBOXAMIDE
 
Authors :  J. K. Muckelbauer
Date :  28 May 15  (Deposition) - 23 Sep 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.31
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinase, Inhibitor, Transferase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Liu, D. G. Batt, J. S. Lippy, N. Surti, A. J. Tebben, J. K. Muckelbauer L. Chen, Y. An, C. Chang, M. Pokross, Z. Yang, H. Wang, J. R. Burke, P. H. Carter, J. A. Tino
Design And Synthesis Of Carbazole Carboxamides As Promising Inhibitors Of Bruton'S Tyrosine Kinase (Btk) And Janus Kinase 2 (Jak2).
Bioorg. Med. Chem. Lett. V. 25 4265 2015
PubMed-ID: 26320619  |  Reference-DOI: 10.1016/J.BMCL.2015.07.102

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE BTK
    Chains: A, B
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM
    Expression System Taxid: 274590
    Expression System Vector: PFASTBAC1-HM
    Expression System Vector Type: BACULOVIRUS
    Gene: BTK, AGMX1, ATK, BPK
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AGAMMAGLOBULINEMIA TYROSINE KINASE,ATK,B-CELL PROGENITOR KINASE,BPK,BRUTON TYROSINE KINASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
14UQ2Ligand/Ion6-{(3R)-3-[(4-TERT-BUTYLBENZOYL)AMINO]PIPERIDIN-1-YL}-2-{[4-(MORPHOLIN-4-YLCARBONYL)PHENYL]AMINO}PYRIDINE-3-CARBOXAMIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
14UQ1Ligand/Ion6-{(3R)-3-[(4-TERT-BUTYLBENZOYL)AMINO]PIPERIDIN-1-YL}-2-{[4-(MORPHOLIN-4-YLCARBONYL)PHENYL]AMINO}PYRIDINE-3-CARBOXAMIDE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
14UQ1Ligand/Ion6-{(3R)-3-[(4-TERT-BUTYLBENZOYL)AMINO]PIPERIDIN-1-YL}-2-{[4-(MORPHOLIN-4-YLCARBONYL)PHENYL]AMINO}PYRIDINE-3-CARBOXAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:408 , VAL A:416 , ALA A:428 , THR A:474 , GLU A:475 , TYR A:476 , MET A:477 , ALA A:478 , ASN A:479 , GLY A:480 , CYS A:481 , LEU A:528binding site for residue 4UQ A 4000
2AC2SOFTWAREVAL B:416 , ALA B:428 , THR B:474 , GLU B:475 , TYR B:476 , MET B:477 , ALA B:478 , ASN B:479 , GLY B:480 , CYS B:481 , ASN B:484 , LEU B:528binding site for residue 4UQ B 4000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BPY)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg A:468 -Pro A:469

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BPY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BPY)

(-) Exons   (0, 0)

(no "Exon" information available for 5BPY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeeee....eeeeeee...eeeeeeee.....hhhhhhhhhhhhhh........eeeee.....eeeeee....eehhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee....hhhhh.hhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bpy A 395 MEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 657
                                   404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654   


Chain B from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeeee....eeeeeee...eeeeeee.....hhhhhhhhhhhhhh........eeeee..eeeee....eehhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhh...hhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bpy B 395 MEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 657
                                   404       414       424       435       445       455       465|      479       489       499       509       519       529       539      |560       570       580       590       600       610       620       630       640       650       
                                                                433|                           465|                                                                         546|                                                                                                   
                                                                 435                            470                                                                          558
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BPY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BPY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BPY)

(-) Gene Ontology  (49, 49)

Asymmetric Unit(hide GO term definitions)

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  BTK_HUMAN | Q06187
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BTK_HUMAN | Q06187: 1aww 1awx 1b55 1btk 1bwn 1k2p 1qly 2ge9 2z0p 3gen 3k54 3ocs 3oct 3p08 3pix 3piy 3piz 3pj1 3pj2 3pj3 4nwm 4ot5 4ot6 4otf 4otq 4otr 4rfy 4rfz 4rg0 4rx5 4yhf 4z3v 4zly 4zlz 5bq0 5fbn 5fbo 5j87 5jrs 5kup 5p9f 5p9g 5p9h 5p9i 5p9j 5p9k 5p9l 5p9m 5t18 5u9d 5vgo

(-) Related Entries Specified in the PDB File

5bq0