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(-) Description

Title :  CONTROLLED LID-OPENING IN THERMOMYCES LANUGINOSUS LIPASE - A SWITCH FOR ACTIVITY AND BINDING
 
Authors :  J. Skjold-Joergensen, J. Vind, O. V. Moroz, E. V. Blagova, V. K. Bhatia, A. Svendsen, K. S. Wilson, M. J. Bjerrum
Date :  15 Sep 15  (Deposition) - 28 Sep 16  (Release) - 22 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydrolase, Thermomyces Lanuginosus Lipase, Engineered Disulfide Bridge, Controlled Binding, Dual Switch, Controlled Activity (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Skjold-Jrgensen, J. Vind, O. V. Moroz, E. Blagova, V. K. Bhatia, A. Svendsen, K. S. Wilson, M. J. Bjerrum
Controlled Lid-Opening In Thermomyces Lanuginosus Lipase- A Engineered Switch For Studying Lipase Function.
Biochim. Biophys. Acta V. 1865 20 2017
PubMed-ID: 27693248  |  Reference-DOI: 10.1016/J.BBAPAP.2016.09.016

(-) Compounds

Molecule 1 - LIPASE
    Chains: A, B
    EC Number: 3.1.1.3
    Engineered: YES
    Expression System: ASPERGILLUS ORYZAE
    Expression System Taxid: 5062
    Fragment: UNP RESIDUES 23-291
    Mutation: YES
    Organism Scientific: THERMOMYCES LANUGINOSUS
    Organism Taxid: 5541
    Synonym: TRIACYLGLYCEROL LIPASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric Unit (4, 5)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
4SO41Ligand/IonSULFATE ION
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
4SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2NAG-1Ligand/IonN-ACETYL-D-GLUCOSAMINE
3PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
4SO41Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:160 , LEU A:185 , THR A:186 , GLN A:188 , GLY A:191 , THR A:192 , LEU A:193 , HOH A:2102 , HOH A:2149BINDING SITE FOR RESIDUE GOL A 401
2AC2SOFTWAREASP A:27 , ALA A:28 , SER A:54 , GLN A:126 , LYS A:127BINDING SITE FOR RESIDUE PEG A 601
3AC3SOFTWAREARG B:160 , LEU B:185 , THR B:186 , GLN B:188 , GLY B:191 , THR B:192 , LEU B:193 , HOH B:2094BINDING SITE FOR RESIDUE GOL B 401
4AC4SOFTWAREPRO A:208 , ARG A:209 , GLU A:210 , GLU B:210 , HOH B:2062 , HOH B:2066 , HOH B:2087BINDING SITE FOR RESIDUE SO4 B 501
5AC5SOFTWAREASN A:33 , HOH A:2023 , HOH A:2037 , HOH A:2148 , ARG B:118 , ASP B:122 , ARG B:125 , ASP B:158 , HOH B:2024 , HOH B:2034 , HOH B:2038Binding site for Mono-Saccharide NAG A 300 bound to ASN A 33

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:22 -A:268
2A:36 -A:41
3A:86 -A:255
4A:104 -A:107
5B:22 -B:268
6B:36 -B:41
7B:86 -B:255
8B:104 -B:107

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Leu A:206 -Pro A:207
2Ser A:217 -Pro A:218
3Leu B:206 -Pro B:207
4Ser B:217 -Pro B:218

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AP9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AP9)

(-) Exons   (0, 0)

(no "Exon" information available for 5AP9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh..eeeeeeeeee....eeeeeeee....eeeeee.......hhhhhh...eee........eeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhh.....eeeeee......hhhhhhhhhhh....eeeeee...hhhhh.hhhhh......eeee........hhh.eeee................hhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ap9 A   1 EVSQDLFNQFNLFAQYSAAAYCGKNNDAPAGTNITCTGNACPEVEKADATFLYSFEDSGVGDVTGFLALDNTNKLIVLSFRGSRSCENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSVADTLRQKVEDAVREHPDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLPPREFGYSHSSPEYWIKSGTLVPVTRNDIVKIEGIDATGGNNQPNIPDCPAHLWYFGLIGTCL 269
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260         


Chain B from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhh..eeeeeeeeee....eeeeeeee....eeeeee......hhhhhh....eee........eeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhh.....eeeeee......hhhhhhhhhhh....eeeeee...hhhhh.hhhhh......eeee........hhh.eeee................hhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ap9 B   1 EVSQDLFNQFNLFAQYSAAAYCITCTGNACPEVEKADATFLYSFEDSGVGDVTGFLALDNTNKLIVLSFRGSRSCENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSVADTLRQKVEDAVREHPDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLPPREFGYSHSSPEYWIKSGTLVPVTRNDIVKIEGIDATGGNNQPNIPDCPAHLWYFGLIGTCL 269
                                    10        20 ||     41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261        
                                                22|                                                                                                                                                                                                                                           
                                                 34
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AP9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AP9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AP9)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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  LIP_THELA | O59952
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  3.1.1.3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LIP_THELA | O59952: 1dt3 1dt5 1dte 1du4 1ein 1gt6 1tib 4dyh 4ea6 4flf 4gbg 4ghw 4gi1 4glb 4gwl 4kjx 4n8s 4s0x 4zgb

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5AP9)