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(-) Description

Title :  STRUCTURE OF P-NITROBENZALDEHYDE INHIBITED LIPASE FROM THERMOMYCES LANUGINOSA AT 2.69 A RESOLUTION
 
Authors :  M. Kumar, M. Sinha, J. Mukherjee, M. N. Gupta, A. Bhushan, P. Kaur, S. Sha T. P. Singh
Date :  14 Aug 12  (Deposition) - 05 Sep 12  (Release) - 05 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.69
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase, Lipase Complex, P-Nitrobenzaldehyde (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kumar, M. Sinha, J. Mukherjee, M. N. Gupta, A. Bhushan, P. Kaur, S. Sharma, T. P. Singh
Structure Of P-Nitrobenzaldehyde Inhibited Lipase From Thermomyces Lanuginosa At 2. 69 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LIPASE
    Chains: A, B
    EC Number: 3.1.1.3
    Organism Scientific: THERMOMYCES LANUGINOSUS
    Organism Taxid: 5541
    Synonym: TRIACYLGLYCEROL LIPASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2XXH2Ligand/Ion4-NITROBENZALDEHYDE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:61 , SER A:83 , ARG A:84 , TRP A:89 , LEU A:147BINDING SITE FOR RESIDUE XXH A 301
2AC2SOFTWAREASN A:11 , PRO A:229 , VAL A:230 , PHE A:262BINDING SITE FOR RESIDUE GOL A 302
3AC3SOFTWARESER B:83 , ARG B:84 , TRP B:89 , LEU B:147 , HOH B:415BINDING SITE FOR RESIDUE XXH B 301
4AC4SOFTWARESER B:58 , GLY B:59BINDING SITE FOR RESIDUE GOL B 302

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:268
2A:36 -A:41
3A:104 -A:107
4B:22 -B:268
5B:36 -B:41
6B:104 -B:107

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Leu A:206 -Pro A:207
2Ser A:217 -Pro A:218
3Leu B:206 -Pro B:207
4Ser B:217 -Pro B:218

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GLB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GLB)

(-) Exons   (0, 0)

(no "Exon" information available for 4GLB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains d4glba_ A: Triacylglycerol lipase                                                                                                                                                                                                                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhh.................hhhhhhh.eeeeeeeeee....eeeeeeee....eeeeee....hhhhhhhh....eee........eeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhh.....eeeeee......hhhhhhhhhhh....eeeeee...hhhhh.hhhhh......eeee............eeee................hhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4glb A   1 EVSQDLFNQFNLFAQYSAAAYCGKNNDAPAGTNITCTGNACPEVEKADATFLYSFEDSGVGDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSVADTLRQKVEDAVREHPDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLPPREFGYSHSSPEYWIKSGTLVPVTRNDIVKIEGIDATGGNNQPNIPDIPAHLWYFGLIGTCL 269
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260         


Chain B from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains d4glbb_ B: Triacylglycerol lipase                                                                                                                                                                                                                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhh.................hhhhhhh.eeeeeeeeee....eeeeeeee....eeeeee....hhhhhhhh....eee........eee.hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhh......eeeee......hhhhhhhhhhh....eeeeee...hhhhh.hhhhh......eeee........hhh.eeee................hhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4glb B   1 EVSQDLFNQFNLFAQYSAAAYCGKNNDAPAGTNITCTGNACPEVEKADATFLYSFEDSGVGDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSVADTLRQKVEDAVREHPDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLPPREFGYSHSSPEYWIKSGTLVPVTRNDIVKIEGIDATGGNNQPNIPDIPAHLWYFGLIGTCL 269
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GLB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GLB)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LIP_THELA | O59952: 1dt3 1dt5 1dte 1du4 1ein 1gt6 1tib 4dyh 4ea6 4flf 4gbg 4ghw 4gi1 4gwl 4kjx 4n8s 4s0x 4zgb 5ap9

(-) Related Entries Specified in the PDB File

4ea6 MODEL PDB