1GT6 - JenaLib

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Title :   S146A MUTANT OF THERMOMYCES (HUMICOLA) LANUGINOSA LIPASE COMPLEX WITH OLEIC ACID

Authors :   A. M. Brzozowski, S. Yapoudjian, M. G. Ivanova, S. A. Patkar, J. Vind, A. Svendsen, R. Verger

Date :   11 Jan 02 (Deposition) - 23 Jan 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Lipase, Hydrolase, Lipid Degradation, Zymogen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Yapoudjian, M. G. Ivanova, A. M. Brzozowski, S. A. Patkar, J. Vind, A. Svendsen, R. Verger
Binding Of Thermomyces (Humicola) Lanuginosa Lipase To The Mixed Micelles Of Cis-Parinaric Acid/Natdc.
Eur. J. Biochem. V. 269 1613 2002
PubMed-ID: 11895431 | Reference-DOI: 10.1046/J.1432-1327.2002.02786.X

Molecule 1 - LIPASE
	Chains	:	A, B
	EC Number	:	3.1.1.3
	Mutation	:	YES
	Organism Scientific	:	THERMOMYCES LANUGINOSUS
	Organism Taxid	:	5541
	Other Details	:	OLEIC ACID
	Synonym	:	TRIACYLGLYCEROL LIPASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	OLA	2	Ligand/Ion	OLEIC ACID

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	OLA	1	Ligand/Ion	OLEIC ACID

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	OLA	1	Ligand/Ion	OLEIC ACID

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:82 , SER A:83 , ASN A:92 , HIS A:145 , ALA A:146 , LEU A:147 , VAL A:203 , HIS A:258	BINDING SITE FOR RESIDUE OLA A1270
2	AC2	SOFTWARE	TYR B:21 , SER B:83 , ASN B:92 , HIS B:110 , ALA B:146 , VAL B:203 , HIS B:258	BINDING SITE FOR RESIDUE OLA B1270

Asymmetric Unit

No.	Residues
1	A:22	-	A:268
2	A:36	-	A:41
3	A:104	-	A:107
4	B:22	-	B:268
5	B:36	-	B:41
6	B:104	-	B:107

Asymmetric Unit

No.	Residues
1	Ala A:47	-	Asp A:48
2	Leu A:206	-	Pro A:207
3	Ser A:217	-	Pro A:218
4	Leu B:206	-	Pro B:207
5	Ser B:217	-	Pro B:218

(no "SAP(SNP)/Variant" information available for 1GT6)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LIPASE_SER	PS00120	Lipases, serine active site.	LIP_THELA	162-171	2	A:140-149 B:140-149

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LIPASE_SER	PS00120	Lipases, serine active site.	LIP_THELA	162-171	1	A:140-149 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LIPASE_SER	PS00120	Lipases, serine active site.	LIP_THELA	162-171	1	- B:140-149

(no "Exon" information available for 1GT6)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:269
 aligned with LIP_THELA | O59952 from UniProtKB/Swiss-Prot  Length:291

    Alignment length:269
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282         
            LIP_THELA    23 EVSQDLFNQFNLFAQYSAAAYCGKNNDAPAGTNITCTGNACPEVEKADATFLYSFEDSGVGDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSVADTLRQKVEDAVREHPDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLPPREFGYSHSSPEYWIKSGTLVPVTRNDIVKIEGIDATGGNNQPNIPDIPAHLWYFGLIGTCL 291
               SCOP domains d1gt6a_ A: Triacylglycerol lipase                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1gt6A00 A:1-269  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhh.eeeeeeeeee....eeeeeeee....eeeeee....hhhhhhhhh...eee........eeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhh.....eeeeee......hhhhhhhhhhh....eeeeee...hhhhh.hhhhh......eeee........hhh.eeee................hhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------LIPASE_SER------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gt6 A   1 EVSQDLFNQFNLFAQYSAAAYCGKNNDAPAGTNITCTGNACPEVEKADATFLYSFEDSGVGDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSVADTLRQKVEDAVREHPDYRVVFTGHALGGALATVAGADLRGNGYDIDVFSYGAPRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLPPREFGYSHSSPEYWIKSGTLVPVTRNDIVKIEGIDATGGNNQPNIPDIPAHLWYFGLIGTCL 269
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Chain B from PDB  Type:PROTEIN  Length:269
 aligned with LIP_THELA | O59952 from UniProtKB/Swiss-Prot  Length:291

    Alignment length:269
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282         
            LIP_THELA    23 EVSQDLFNQFNLFAQYSAAAYCGKNNDAPAGTNITCTGNACPEVEKADATFLYSFEDSGVGDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSVADTLRQKVEDAVREHPDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLPPREFGYSHSSPEYWIKSGTLVPVTRNDIVKIEGIDATGGNNQPNIPDIPAHLWYFGLIGTCL 291
               SCOP domains d1gt6b_ B: Triacylglycerol lipase                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1gt6B00 B:1-269  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh.......................eeeeeeeee....eeeeeeee....eeeeee....hhhhhhhhh...eee........eeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhh.....eeeeee......hhhhhhhhhhh....eeeeee...hhhhh.hhhhh......eeee........hhh.eeee................hhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------LIPASE_SER------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gt6 B   1 EVSQDLFNQFNLFAQYSAAAYCGKNNDAPAGTNITCTGNACPEVEKADATFLYSFEDSGVGDVTGFLALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEINDICSGCRGHDGFTSSWRSVADTLRQKVEDAVREHPDYRVVFTGHALGGALATVAGADLRGNGYDIDVFSYGAPRVGNRAFAEFLTVQTGGTLYRITHTNDIVPRLPPREFGYSHSSPEYWIKSGTLVPVTRNDIVKIEGIDATGGNNQPNIPDIPAHLWYFGLIGTCL 269
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: alpha/beta-Hydrolases (971)

Superfamily: alpha/beta-Hydrolases (971)

Family: Fungal lipases (53)

Protein domain: Triacylglycerol lipase (29)

Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541] (17)

1a	d1gt6a_	A:
1b	d1gt6b_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1820, no name defined] (692)

Thermomyces lanuginosus. Organism_taxid: 5541 (7)

1a	1gt6A00	A:1-269
1b	1gt6B00	B:1-269

(no "Pfam Domain" information available for 1GT6)

Asymmetric Unit(hide GO term definitions)

Chain A,B (LIP_THELA | O59952)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0004806	triglyceride lipase activity	Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a carboxylate.
biological process
	GO:0016042	lipid catabolic process	The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.

Asymmetric Unit
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	Cis Peptide Bonds
		Ala A:47 - Asp A:48	[ RasMol ]
		Leu A:206 - Pro A:207	[ RasMol ]
		Leu B:206 - Pro B:207	[ RasMol ]
		Ser A:217 - Pro A:218	[ RasMol ]
		Ser B:217 - Pro B:218	[ RasMol ]

Biological Units
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1dt3	THE STRUCTURAL ORIGINS OF INTERFACIAL ACTIVATION IN THERMOMYCES (HUMICOLA) LANUGINOSA LIPASE
1dt5	THE STRUCTURAL ORIGINS OF INTERFACIAL ACTIVATION IN THERMOMYCES (HUMICOLA) LANUGINOSA LIPASE
1dte	THE STRUCTURAL ORIGINS OF INTERFACIAL ACTIVATION IN THERMOMYCES (HUMICOLA) LANUGINOSA LIPASE
1du4	THE STRUCTURAL ORIGINS OF INTERFACIAL ACTIVATION IN THERMOMYCES (HUMICOLA) LANUGINOSA LIPASE OTHER STRUCTURE DETAILS

Description

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SS Bonds (6, 6)

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