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(-) Description

Title :  CRYSTAL STRUCTURE OF BOMBYX MORI CPV1 POLYHEDRA BASE DOMAIN DELETED MUTANT
 
Authors :  X. Ji, D. Axford, R. Owen, G. Evans, H. M. Ginn, G. Sutton, D. I. Stuart
Date :  17 Jul 15  (Deposition) - 02 Sep 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Viral Protein, Insect Virus Occlusion Body, Microcrystal (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Ji, D. Axford, R. Owen, G. Evans, H. M. Ginn, G. Sutton, D. I. Stuart
Polyhedra Structures And The Evolution Of The Insect Viruses.
J. Struct. Biol. V. 192 88 2015
PubMed-ID: 26291392  |  Reference-DOI: 10.1016/J.JSB.2015.08.009

(-) Compounds

Molecule 1 - POLYHEDRIN
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Organism Scientific: BOMBYX MORI CYPOVIRUS 1
    Organism Taxid: 110829

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5A9B)

(-) Sites  (0, 0)

(no "Site" information available for 5A9B)

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ser A:245 -Asn A:246

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A9B)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhh....eeeeeeeee....eeeeeeee..eeeeeeee..hhhhh...eeeeeeee....hhhhheeeee........hhhhh.....hhhhheeeee..eeeeeeeeee.......eeeeeeee.............hhhhhhhhhhhheeeeeee.hhhhhhhhh.......ee.....ee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a9b A   8 SNRDFRGREQRLFNSEQYNYNSSLNGEVSVWVYAYYSDGSVLVINKNSQYKVGISETFKVLKEGSGAKPRAIQIIFSPSVNVRTIKMAKGNAVSVPDEYLQRSHPWEATGIKYRKIKRDGEIVGYSHYFELPHEYNSISLAVSGVHKNPSSYNVGSAHNVMDVFQSCDLALRFCNRYWAELELVNHYISPNAYPYLDINNHSYGVALSN 246
                                    17        27        37        47        57        67  ||   107       117       127       137       147       157       167       177       187       197       207       217       227       237         
                                                                                         70|                                                                                                                                                 
                                                                                         101
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(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A9B)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (2, 2)

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    Ser A:245 - Asn A:246   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PYHD_CPVBM | P11041: 5axu 5axv 5exy 5exz 5gqi 5gqj 5gqk 5gql 5gqm 5gqn

(-) Related Entries Specified in the PDB File

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