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(-) Description

Title :  CRYSTAL STRUCTURE OF CYPOVIRUS POLYHEDRA R13A MUTANT
 
Authors :  S. Abe, H. Ijiri, H. Negishi, H. Yamanaka, K. Sasaki, K. Hirata, H. Mori,
Date :  01 Aug 15  (Deposition) - 11 Nov 15  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (12x)
Keywords :  Intracellular Crystal, Nucleotide Binding, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Abe, H. Ijiri, H. Negishi, H. Yamanaka, K. Sasaki, K. Hirata, H. Mori T. Ueno
Design Of Enzyme-Encapsulated Protein Containers By In Vivo Crystal Engineering
Adv. Mater. Weinheim V. 27 7951 2015
PubMed-ID: 26503073  |  Reference-DOI: 10.1002/ADMA.201503827

(-) Compounds

Molecule 1 - POLYHEDRIN
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Mutation: YES
    Organism Common: BMCPV
    Organism Scientific: BOMBYX MORI CYPOVIRUS 1
    Organism Taxid: 110829
    Synonym: C-POLYHEDRIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (12x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 7)

Asymmetric Unit (5, 7)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
3CTP1Ligand/IonCYTIDINE-5'-TRIPHOSPHATE
4EDO3Ligand/Ion1,2-ETHANEDIOL
5MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (4, 72)
No.NameCountTypeFull Name
1ACE12Mod. Amino AcidACETYL GROUP
2ATP12Ligand/IonADENOSINE-5'-TRIPHOSPHATE
3CTP12Ligand/IonCYTIDINE-5'-TRIPHOSPHATE
4EDO36Ligand/Ion1,2-ETHANEDIOL
5MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREATP A:302binding site for residue MG A 301
2AC2SOFTWARETYR A:25 , LYS A:152 , LYS A:154 , ARG A:155 , ASP A:156 , GLY A:157 , TYR A:162 , LYS A:184 , MG A:301 , HOH A:401 , HOH A:446 , HOH A:510binding site for residue ATP A 302
3AC3SOFTWAREHIS A:76 , ASN A:77 , ASP A:78 , SER A:79 , TYR A:80 , ASP A:81 , ASP A:96 , ARG A:98 , HOH A:420 , HOH A:508binding site for residue CTP A 303
4AC4SOFTWAREASP A:3 , VAL A:4 , ALA A:5 , GLU A:217 , ILE A:235 , HOH A:416 , HOH A:422binding site for residue EDO A 304
5AC5SOFTWAREASN A:28 , SER A:114 , PRO A:115 , GLN A:138 , PRO A:231 , HOH A:443 , HOH A:449binding site for residue EDO A 305
6AC6SOFTWAREARG A:139 , ASN A:236 , HIS A:238binding site for residue EDO A 306

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AXU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AXU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AXU)

(-) Exons   (0, 0)

(no "Exon" information available for 5AXU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeeeeee.eeeeeehhhhhh........hhhhhhhhhhhhhh................eeeeee...eeeeeeeeeee........hhhhh.....hhhhheeeee..eeeeeeeeee........eeeeeeee............hhhhhhhhhhhheeeeeee.hhhhhhhhh.......ee.....ee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5axu A   1 xADVAGTSNRDFAGREQRLFNSEQYNYNNSLNGEVSVWVYAYYSDGSVLVINKNSQYKVGISETFKALKEYREGQHNDSYDEYEVNQSIYYPNGGDARKFHSNAKPRAIQIIFSPSVNVRTIKMAKGNAVSVPDEYLQRSHPWEATGIKYRKIKRDGEIVGYSHYFELPHEYNSISLAVSGVHKNPSSYNVGSAHNVMDVFQSCDLALRFCNRYWAELELVNHYISPNAYPYLDINNHSYGVALSNRQ 248
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        
                            |                                                                                                                                                                                                                                                       
                            1-ACE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AXU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AXU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AXU)

(-) Gene Ontology  (2, 2)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PYHD_CPVBM | P11041: 5a9b 5axv 5exy 5exz 5gqi 5gqj 5gqk 5gql 5gqm 5gqn

(-) Related Entries Specified in the PDB File

5axv