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(-) Description

Title :  CRYSTAL STRUCTURE OF CYPOVIRUS POLYHEDRA MUTANT WITH DELETION OF GLY192-ALA194
 
Authors :  S. Abe, H. Tabe, H. Ijiri, K. Yamashita, K. Hirata, H. Mori, T. Ueno
Date :  07 Aug 16  (Deposition) - 15 Feb 17  (Release) - 12 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (12x)
Keywords :  In Vivo Protein Crystal, Polyhedra, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Abe, H. Tabe, H. Ijiri, K. Yamashita, K. Hirata, K. Atsumi, T. Shimoi M. Akai, H. Mori, S. Kitagawa, T. Ueno
Crystal Engineering Of Self-Assembled Porous Protein Materials In Living Cells
Acs Nano V. 11 2410 2017
PubMed-ID: 28094987  |  Reference-DOI: 10.1021/ACSNANO.6B06099

(-) Compounds

Molecule 1 - POLYHEDRIN
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Mutation: YES
    Organism Common: BMCPV
    Organism Scientific: BOMBYX MORI CYPOVIRUS 1
    Organism Taxid: 110829
    Synonym: C-POLYHEDRIN,CYPOVIRUS POLYHEDRIN PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (12x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2CL1Ligand/IonCHLORIDE ION
3EDO4Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (2, 60)
No.NameCountTypeFull Name
1ACE12Mod. Amino AcidACETYL GROUP
2CL-1Ligand/IonCHLORIDE ION
3EDO48Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:2 , LEU A:31 , HOH A:492binding site for residue CL A 301
2AC2SOFTWAREASN A:28 , SER A:114 , PRO A:115 , GLN A:138 , PRO A:231 , HOH A:413 , HOH A:440binding site for residue EDO A 302
3AC3SOFTWAREGLU A:23 , TYR A:27 , ARG A:139 , ASN A:236 , ASN A:237 , HIS A:238binding site for residue EDO A 303
4AC4SOFTWAREALA A:2 , ASP A:3 , GLY A:46 , PHE A:100 , ALA A:216 , GLU A:217 , HOH A:518binding site for residue EDO A 304
5AC5SOFTWAREASN A:118 , ARG A:120 , HOH A:501binding site for residue EDO A 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GQK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5GQK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GQK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GQK)

(-) Exons   (0, 0)

(no "Exon" information available for 5GQK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhh...eeeeeeeee.....eeeeeeeee.eeeeeehhhhhh........hhhhhhhhhhhhhh................eeeeee....hhhhheeeee........hhhhh.....hhhhheeeee..eeeeeeeeee........eeeeeee..........hhhhhhhhhhhheeeeeee.hhhhhhhhh.......ee.....ee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gqk A   1 xADVAGTSNRDFRGREQRLFNSEQYNYNNSLNGEVSVWVYAYYSDGSVLVINKNSQYKVGISETFKALKEYREGQHNDSYDEYEVNQSIYYPNGGDARKFHSNAKPRAIQIIFSPSVNVRTIKMAKGNAVSVPDEYLQRSHPWEATGIKYRKIKRDGEIVGYSHYFELPHEYNSISLAVSGVHKNPSSYNVHNVMDVFQSCDLALRFCNRYWAELELVNHYISPNAYPYLDINNHSYGVALSNRQ 248
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190||     203       213       223       233       243     
                            |                                                                                                                                                                                           191|                                                     
                            1-ACE                                                                                                                                                                                        195
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GQK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GQK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GQK)

(-) Gene Ontology  (2, 2)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PYHD_CPVBM | P11041: 5a9b 5axu 5axv 5exy 5exz 5gqi 5gqj 5gql 5gqm 5gqn

(-) Related Entries Specified in the PDB File

5gqi 5gqj 5gql 5gqm 5gqn