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(-) Description

Title :  CRYSTAL STRUCTURE OF THE MAVS-TRAF6 COMPLEX
 
Authors :  Z. B. Shi, Z. Zhou
Date :  09 Apr 15  (Deposition) - 23 Sep 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.95
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Complex, Adaptor, E3 Ligase, Antiviral Signaling, Ligase-Signaling Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Shi, Z. Zhang, Z. Zhang, Y. Wang, C. Li, X. Wang, F. He, L. Sun, S. Jiao, W. Shi, Z. Zhou
Structural Insights Into Mitochondrial Antiviral Signaling Protein (Mavs)-Tumor Necrosis Factor Receptor-Associated Factor 6 (Traf6) Signaling
J. Biol. Chem. V. 290 26811 2015
PubMed-ID: 26385923  |  Reference-DOI: 10.1074/JBC.M115.666578

(-) Compounds

Molecule 1 - TNF RECEPTOR-ASSOCIATED FACTOR 6
    Chains: A, B
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: CONDONPLUS
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 346-504
    Gene: TRAF6, RNF85
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: E3 UBIQUITIN-PROTEIN LIGASE TRAF6,INTERLEUKIN-1 SIGNAL TRANSDUCER,RING FINGER PROTEIN 85
 
Molecule 2 - PEPTIDE FROM MITOCHONDRIAL ANTIVIRAL-SIGNALING PROTEIN
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: CONDONPLUS
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 450-468
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAVS,CARD ADAPTER INDUCING INTERFERON BETA,CARDIF,INTERFERON BETA PROMOTER STIMULATOR PROTEIN 1,IPS-1,PUTATIVE NF-KAPPA-B- ACTIVATING PROTEIN 031N,VIRUS-INDUCED-SIGNALING ADAPTER,VISA

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4Z8M)

(-) Sites  (0, 0)

(no "Site" information available for 4Z8M)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Z8M)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Lys A:384 -Pro A:385
2Trp A:424 -Pro A:425
3Pro A:441 -Val A:442
4Lys B:384 -Pro B:385
5Trp B:424 -Pro B:425
6Glu B:439 -Ala B:440
7Tyr C:608 -Lys C:609

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z8M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z8M)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z8M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhhhhhhhhh...eeee...ee......eeeeeeee..........eeeeeeeee...hhhhh.....eeeeeee...........eeeeeee................eeeeeeeeee.hhhhhh..ee..eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z8m A 350 NGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVST 501
                                   359       369       379       389       399       409       419       429       439       449       459       469       479       489       499  


Chain B from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhhhhhhhhh...eeee...ee......eeeeeeee..........eeeeeeeee...hhhhh.....eeeeeee...........eeeeeee...hhhhh........eeeeeeeeee.hhhhhh.......eeeeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z8m B 350 NGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDLEH 507
                                   359       369       379       389       399       409       419       429       439       449       459       469       479       489       499        


Chain C from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ...eeee.. Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 4z8m C 601 HGPEENEYK 609


Chain D from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ..eeee. Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 4z8m D 602 GPEENEY 608
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z8M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z8M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z8M)

(-) Gene Ontology  (118, 126)

Asymmetric Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 4z8m)
 
  Cis Peptide Bonds
    Glu B:439 - Ala B:440   [ RasMol ]  
    Lys A:384 - Pro A:385   [ RasMol ]  
    Lys B:384 - Pro B:385   [ RasMol ]  
    Pro A:441 - Val A:442   [ RasMol ]  
    Trp A:424 - Pro A:425   [ RasMol ]  
    Trp B:424 - Pro B:425   [ RasMol ]  
    Tyr C:608 - Lys C:609   [ RasMol ]  
 
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  4z8m
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  MAVS_HUMAN | Q7Z434
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  TRAF6_HUMAN | Q9Y4K3
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  6.3.2.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MAVS_HUMAN | Q7Z434: 2ms7 2ms8 2vgq 3j6c 3j6j 3rc5 4p4h 5jek
        TRAF6_HUMAN | Q9Y4K3: 1lb4 1lb5 1lb6 2eci 2jmd 3hcs 3hct 3hcu

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4Z8M)