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(-) Description

Title :  CRYSTAL STRUCTURE OF DYRK1AA IN COMPLEX WITH 10-BROMO-SUBSTITUTED 11H-INDOLO[3,2-C]QUINOLONE-6-CARBOXYLIC ACID INHIBITOR 5T
 
Authors :  A. Chaikuad, H. Falke, T. Krojer, F. Von Delft, C. H. Arrowsmith, A. M. E C. Bountra, C. Kunick, S. Knapp, Structural Genomics Consortium (
Date :  05 Mar 15  (Deposition) - 25 Mar 15  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Halogen, Inhibitor, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Falke, A. Chaikuad, A. Becker, N. Loaec, O. Lozach, S. Abu Jhaisha, W. Becker, P. G. Jones, L. Preu, K. Baumann, S. Knapp, L. Meijer, C. Kunick
10-Iodo-11H-Indolo[3, 2-C]Quinoline-6-Carboxylic Acids Are Selective Inhibitors Of Dyrk1A.
J. Med. Chem. V. 58 3131 2015
PubMed-ID: 25730262  |  Reference-DOI: 10.1021/JM501994D

(-) Compounds

Molecule 1 - DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION-REGULATED KINASE 1A
    Chains: A
    EC Number: 2.7.12.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PNIC28-BSA4
    Expression System Strain: BL21(DE3)-R3-PRARE2
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 127-485
    Gene: DYRK1A, DYRK, MNB, MNBH
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DUAL SPECIFICITY YAK1-RELATED KINASE, HP86, PROTEIN KINASE MINIBRAIN HOMOLOG, HMNB

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 16)

Asymmetric/Biological Unit (4, 16)
No.NameCountTypeFull Name
14E31Ligand/Ion10-BROMO-2-IODO-11H-INDOLO[3,2-C]QUINOLINE-6-CARBOXYLICACID
2EDO9Ligand/Ion1,2-ETHANEDIOL
3PTR1Mod. Amino AcidO-PHOSPHOTYROSINE
4SO45Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:264 , ARG A:300 , SER A:301 , HOH A:1046 , HOH A:1111binding site for residue SO4 A 501
02AC2SOFTWAREARG A:325 , ARG A:328 , GLU A:366 , HOH A:667 , HOH A:715 , HOH A:1118binding site for residue SO4 A 502
03AC3SOFTWARESER A:169 , LYS A:193 , LYS A:194 , HOH A:650 , HOH A:659 , HOH A:694 , HOH A:708binding site for residue SO4 A 503
04AC4SOFTWAREASN A:144 , TYR A:145 , SER A:169 , LYS A:191 , LYS A:193 , HOH A:645 , HOH A:695 , HOH A:1145binding site for residue SO4 A 504
05AC5SOFTWARELYS A:218 , TYR A:219 , ARG A:250 , HOH A:605 , HOH A:689 , HOH A:716binding site for residue SO4 A 505
06AC6SOFTWAREASP A:454 , LEU A:457 , ARG A:458 , HOH A:894 , HOH A:986binding site for residue EDO A 506
07AC7SOFTWAREASN A:251 , THR A:252 , PRO A:279 , GLU A:280 , HOH A:641 , HOH A:681 , HOH A:718 , HOH A:923binding site for residue EDO A 507
08AC8SOFTWARESER A:258 , ASN A:260 , HOH A:1048 , HOH A:1081 , HOH A:1085binding site for residue EDO A 508
09AC9SOFTWAREHIS A:223 , LYS A:225 , HOH A:1022 , HOH A:1148binding site for residue EDO A 509
10AD1SOFTWARELYS A:175 , TYR A:472 , HOH A:614 , HOH A:619 , HOH A:652binding site for residue EDO A 510
11AD2SOFTWAREGLN A:199 , ILE A:202 , TYR A:319 , HOH A:611 , HOH A:629binding site for residue EDO A 511
12AD3SOFTWARELYS A:465 , THR A:466 , ARG A:467 , ILE A:468 , GLN A:469 , TYR A:472 , HOH A:603 , HOH A:652binding site for residue EDO A 512
13AD4SOFTWAREARG A:231binding site for residue EDO A 513
14AD5SOFTWAREARG A:226 , HOH A:957 , HOH A:1022 , HOH A:1097binding site for residue EDO A 514
15AD6SOFTWAREGLY A:166 , LYS A:167 , PHE A:170 , ALA A:186 , LYS A:188 , PHE A:238 , GLU A:239 , LEU A:241 , LEU A:294 , ASP A:307 , HOH A:710 , HOH A:803binding site for residue 4E3 A 515

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YLL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YLL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YLL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YLL)

(-) Exons   (0, 0)

(no "Exon" information available for 4YLL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:342
                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh.............ee...eeeeeeeeee..eeeeeeee....eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..........eeeeeee..eeeeee.....hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.....ee....hhh.eee.......eee......ee.hhh......hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhh...hhhhheee.....eee..........hhhhhh.....hhhhh.......hhhhhhhhhhhhhhhh........hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4yll A 134 KVYNDGYDDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQyIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKEYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKK 481
                                   143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403   ||  419       429       439       449       459       469       479  
                                                                                                                                                                                                                     321-PTR                                                                               407|                                                                   
                                                                                                                                                                                                                                                                                                            414
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YLL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YLL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YLL)

(-) Gene Ontology  (29, 29)

Asymmetric/Biological Unit(hide GO term definitions)

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  4yll
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  DYR1A_HUMAN | Q13627
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  2.7.12.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DYR1A_HUMAN | Q13627: 2vx3 2wo6 3anq 3anr 4aze 4mq1 4mq2 4nct 4ylj 4ylk 4yu2 5a3x 5a4e 5a4l 5a4q 5a4t 5a54 5aik

(-) Related Entries Specified in the PDB File

4ylj 4ylk