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(-) Description

Title :  STRUCTURE OF FL AUTOREPRESSION PROMOTER COMPLEX
 
Authors :  M. A. Schumacher
Date :  25 Feb 15  (Deposition) - 29 Jul 15  (Release) - 12 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.77
Chains :  Asym./Biol. Unit :  B,C,D,E,G,K,R,T
Keywords :  Persistence, Multidrug Tolerance, Autorepression, Promoter, Transcription, Transferase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Schumacher, P. Balani, J. Min, N. B. Chinnam, S. Hansen, M. Vulic, K. Lewis, R. G. Brennan
Hipba-Promoter Structures Reveal The Basis Of Heritable Multidrug Tolerance.
Nature V. 524 59 2015
PubMed-ID: 26222023  |  Reference-DOI: 10.1038/NATURE14662

(-) Compounds

Molecule 1 - ANTITOXIN HIPB
    Chains: B, E, C, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 4-74
    Gene: HIPB, B1508, JW1501
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
 
Molecule 2 - SERINE/THREONINE-PROTEIN KINASE HIPA
    Chains: D, K
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HIPA, B1507, JW1500
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
    Synonym: SER/THR-PROTEIN KINASE HIPA,TOXIN HIPA
 
Molecule 3 - DNA (50-MER)
    Chains: R
    Engineered: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synthetic: YES
 
Molecule 4 - DNA (50-MER)
    Chains: T
    Engineered: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : BCDEGKRT

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4YG7)

(-) Sites  (0, 0)

(no "Site" information available for 4YG7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YG7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YG7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YG7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YG7)

(-) Exons   (0, 0)

(no "Exon" information available for 4YG7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:69
                                                                                                     
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 4yg7 B   4 FQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCD  72
                                    13        23        33        43        53        63         


Chain C from PDB  Type:PROTEIN  Length:71
                                                                                                       
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh...hhhhhh.....hhhhhhhhhhh....hhhhhhhhhhh..eeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 4yg7 C   4 FQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAK  74
                                    13        23        33        43        53        63        73 


Chain D from PDB  Type:PROTEIN  Length:414
                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee......eeee.........eehhhhhh....................hhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhh........eee..................hhhhhhhhhhhh...........eeee.................eeee......hhhhhhhhhhh.......................ee....ee......ee...eeehhhhhh.hhhhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.....hhhh.eee.hhhhh........................................hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhh.........hhhhhhhhhh..hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4yg7 D   2 PKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMAWEKLTEARLEEVLTAYKADFRISVAGAQEKTALLRIGNDWCIPKGITPTTHIIKLPILSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWNAERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGATQGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKGKKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTAVESNVLRLHGRLSREY 437
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  ||   152       162       172       182 ||    203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433    
                                                                                                                                                              134|                                   184|                                                                                                                                                                                                                                                 
                                                                                                                                                               146                                    196                                                                                                                                                                                                                                                 


Chain E from PDB  Type:PROTEIN  Length:69
                                                                                                     
               SCOP domains --------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhh..eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 4yg7 E   4 FQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCD  72
                                    13        23        33        43        53        63         


Chain G from PDB  Type:PROTEIN  Length:71
                                                                                                       
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhh..eeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 4yg7 G   4 FQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAK  74
                                    13        23        33        43        53        63        73 


Chain K from PDB  Type:PROTEIN  Length:412
                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....................hhhhhh....................hhhhhhhhh....hhhhh............................eeeee............ee.hhhhhhhhhhh............ee...ee..eeee........eeee.....hhhhhhhhhhhhhhh..........eee..eeeeeee...eee......eee..eee.hhhh..hhhhh.........hhhhhhhh...hhhhhhhhhhhhhhhhhhhh....hhhh.eee.hhhhh.............................................hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yg7 K   2 PKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMAWEKLTEARLEEVLTAYKARISVAGAQEKTALLRIGNDWCIPKGITPTTHIIKLPILSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWNAERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGATQGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKGKKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTAVESNVLRLHGRLSREY 437
                                    11        21        31        41        51        61        71        81        91       101       111       121       131  ||   154       164       174       184|      205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435  
                                                                                                                                                              134|                                 184|                                                                                                                                                                                                                                                 
                                                                                                                                                               148                                  196                                                                                                                                                                                                                                                 


Chain R from PDB  Type:DNA  Length:50
                                                                                  
                 4yg7 R 698 GCTTATCCCCTTAAGGGGATATATATATATATATCCCCTTAAGGGGATAA 747
                                   707       717       727       737       747


Chain T from PDB  Type:DNA  Length:50
                                                                                  
                 4yg7 T 670 GCTTATCCCCTTAAGGGGATATATATATATATATCCCCTTAAGGGGATAG 719
                                   679       689       699       709       719
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YG7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YG7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YG7)

(-) Gene Ontology  (20, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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(no "Cis Peptide Bonds" information available for 4yg7)
 

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  4yg7
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  HIPA_ECOLI | P23874
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  HIPB_ECOLI | P23873
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HIPA_ECOLI | P23874: 2wiu 3dnt 3dnu 3dnv 3fbr 3hzi 3tpb 3tpd 3tpe 3tpt 3tpv 5k98
        HIPB_ECOLI | P23873: 2wiu 3dnv 3hzi 4yg1 4yg4 4z58 4z59 4z5c 4z5d 4z5h

(-) Related Entries Specified in the PDB File

4yg1 4yg4