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(-) Description

Title :  STRUCTURE OF HIPA(S150A)
 
Authors :  M. A. Schumacher
Date :  07 Sep 11  (Deposition) - 03 Oct 12  (Release) - 17 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym./Biol. Unit :  A
Keywords :  Hipa, Persistenct, Multidrug Tolerance, Hipb, Authophosphorylation, P-Loop, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. A. Schumacher, J. Min, T. M. Link, Z. Guan, W. Xu, Y. H. Ahn, E. J. Soderblom, J. M. Kurie, A. Evdokimov, M. A. Moseley, K. Lewis, R. G. Brennan
Role Of Unusual P Loop Ejection And Autophosphorylation In Hipa-Mediated Persistence And Multidrug Tolerance.
Cell Rep V. 2 518 2012
PubMed-ID: 22999936  |  Reference-DOI: 10.1016/J.CELREP.2012.08.013

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE HIPA
    ChainsA
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneHIPA
    MutationYES
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562
    SynonymSER/THR-PROTEIN KINASE HIPA, TOXIN HIPA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2PO42Ligand/IonPHOSPHATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:164 , ASN A:165 , LYS A:363 , THR A:364 , ALA A:365 , HOH A:591BINDING SITE FOR RESIDUE CL A 441
2AC2SOFTWAREALA A:358 , SER A:359 , LYS A:363 , ARG A:372 , HIS A:373 , HOH A:588 , PO4 A:834BINDING SITE FOR RESIDUE PO4 A 833
3AC3SOFTWARELYS A:363 , HOH A:495 , HOH A:588 , HOH A:591 , PO4 A:833BINDING SITE FOR RESIDUE PO4 A 834

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3TPB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3TPB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3TPB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3TPB)

(-) Exons   (0, 0)

(no "Exon" information available for 3TPB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:401
 aligned with HIPA_ECOLI | P23874 from UniProtKB/Swiss-Prot  Length:440

    Alignment length:436
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431      
           HIPA_ECOLI     2 PKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMAWEKLTEARLEEVLTAYKADIPLGMIREENDFRISVAGAQEKTALLRIGNDWCIPKGITPTTHIIKLPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWNAERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGATDGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKGKKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTAVESNVLRLHGRLSREY 437
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeeeeeee.....eeeeehhhhhhh..................hhhhhhhhhh....hhhhhhhhhhhhh....hhhhhhhhhh......eeeee..-----....eee.hhhhhhhhhh..---------------------...eeeeeee..eeeee.......eeee...---------....hhhhhhhhhhhhhhhh......eeeeee..eeeeeee...eee......eee..eeehhhhh..hhhhhhhhhh..hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhh.eeee.hhh.eee........hhhhh.....hhhh.eeeeeeee..eeeee.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tpb A   2 PKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPED-----PIMAWEKLTEARLEEVLTAY---------------------AQEKTALLRIGNDWCIPKGITPTTHIIKLPI---------LDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWNARRTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGATQGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKGKKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTAVESNVLRLHGRLSREY 437
                                    11        21        31        41        51        61        71        81        91       101     |   - |     121       131|        -         -  |    161       171       181  |      -  |    201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431      
                                                                                                                                   107   113                132                   154                           184       194                                                                                                                                                                                                                                                   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3TPB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3TPB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3TPB)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (HIPA_ECOLI | P23874)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0022611    dormancy process    A developmental process in which dormancy (sometimes called a dormant state) is induced, maintained or broken. Dormancy is a suspension of most physiological activity and growth that can be reactivated.
    GO:0043086    negative regulation of catalytic activity    Any process that stops or reduces the activity of an enzyme.
    GO:0036289    peptidyl-serine autophosphorylation    The phosphorylation by a protein of one or more of its own serine amino acid residues, or a serine residue on an identical protein.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
    GO:0044010    single-species biofilm formation    A process in which planktonically growing microorganisms of the same species grow at a liquid-air interface or on a solid substrate under the flow of a liquid and produce extracellular polymers that facilitate matrix formation, resulting in a change in the organisms' growth rate and gene transcription.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HIPA_ECOLI | P238742wiu 3dnt 3dnu 3dnv 3fbr 3hzi 3tpd 3tpe 3tpt 3tpv 4yg7 5k98

(-) Related Entries Specified in the PDB File

3dnt 3dnu 3dnv 3fbr 3hzi 3tpd 3tpe 3tpt 3tpv