2WIU - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   MERCURY-MODIFIED BACTERIAL PERSISTENCE REGULATOR HIPBA

Authors :   A. Evdokimov, I. Voznesensky, K. Fennell, M. Anderson, J. F. Smith, D. A. Fisher

Date :   17 May 09 (Deposition) - 28 Jul 09 (Release) - 04 Apr 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.35

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Transferase Transcription Complex, Serine Kinase, Dna-Binding, Mercury Derivative, Repressor, Transcription Regulation, Sad (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Evdokimov, I. Voznesensky, K. Fennell, M. Anderson, J. F. Smith, D. A. Fisher
New Kinase Regulation Mechanism Found In Hipba: A Bacterial Persistence Switch.
Acta Crystallogr. , Sect. D V. 65 875 2009
PubMed-ID: 19622872 | Reference-DOI: 10.1107/S0907444909018800

Molecule 1 - PROTEIN HIPA
	Chains	:	A, C
	EC Number	:	2.7.11.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Other Details	:	INVITROGEN DH5ALPHA CELLS
	Strain	:	DH5ALPHA
	Synonym	:	PROTEIN KINASE COMPONENT OF PERSISTENCE REGULATOR HIPA

Molecule 2 - HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB
	Chains	:	B, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Other Details	:	INVITROGEN DH5ALPHA
	Strain	:	DH5ALPHA
	Synonym	:	DNA-INDING COMPONENT OF PERSISTENCE REGULATOR HIPBA

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 17)

No.	Name	Count	Type	Full Name
1	CL	10	Ligand/Ion	CHLORIDE ION
2	HG	7	Ligand/Ion	MERCURY (II) ION

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TRP A:117 , CYS A:168	BINDING SITE FOR RESIDUE HG A1438
02	AC2	SOFTWARE	CYS A:256 , PRO A:262 , LYS A:266	BINDING SITE FOR RESIDUE HG A1439
03	AC3	SOFTWARE	CYS C:168	BINDING SITE FOR RESIDUE HG C1438
04	AC4	SOFTWARE	CYS C:168	BINDING SITE FOR RESIDUE HG C1439
05	AC5	SOFTWARE	CYS C:256	BINDING SITE FOR RESIDUE HG C1440
06	AC6	SOFTWARE	THR B:69 , LEU B:70 , CYS B:71 , CL B:1089	BINDING SITE FOR RESIDUE HG B1087
07	AC7	SOFTWARE	THR D:69 , CYS D:71 , CL D:1088	BINDING SITE FOR RESIDUE HG D1087
08	AC8	SOFTWARE	LYS A:363 , ALA A:365	BINDING SITE FOR RESIDUE CL A1440
09	AC9	SOFTWARE	ARG A:372 , HIS A:373	BINDING SITE FOR RESIDUE CL A1441
10	BC1	SOFTWARE	GLY C:274	BINDING SITE FOR RESIDUE CL C1441
11	BC2	SOFTWARE	HG B:1087	BINDING SITE FOR RESIDUE CL B1089
12	BC3	SOFTWARE	CYS D:71 , HG D:1087	BINDING SITE FOR RESIDUE CL D1088
13	BC4	SOFTWARE	GLY A:274 , ARG A:277	BINDING SITE FOR RESIDUE CL A1442

(no "SS Bond" information available for 2WIU)

(no "Cis Peptide Bond" information available for 2WIU)

(no "SAP(SNP)/Variant" information available for 2WIU)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_CROC1	PS50943	Cro/C1-type HTH domain profile.	HIPB_ECOLI	17-71	2	B:17-71 D:17-71

(no "Exon" information available for 2WIU)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:431
 aligned with HIPA_ECOLI | P23874 from UniProtKB/Swiss-Prot  Length:440

    Alignment length:436
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431      
           HIPA_ECOLI     2 PKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMAWEKLTEARLEEVLTAYKADIPLGMIREENDFRISVAGAQEKTALLRIGNDWCIPKGITPTTHIIKLPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWNAERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGATDGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKGKKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTAVESNVLRLHGRLSREY 437
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeeeeeee.....eeeeehhhhhhh..................hhhhhhhhhh....hhhhhhhhhhhh.....hhhhhhhhhh......eeeee...---..........hhhhhhhhh..--......................eeeeeee..eee.........eeee...eeeee..eeeee.hhhhhhhhhhhhhhhh......eeeeee..eeeeeee...eee......eee..eeehhhhh..hhhhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.....hhhh.eeee.....eee........hhhhh.....hhhh.eeeeeee....eeee.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wiu A   2 PKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDE---HPIMAWEKLTEARLEEVLTAY--DIPLGMIREENDFRISVAGAQEKTALLRIGNDWCIPKGITPTTHIIKLPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWNAERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGATDGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKGKKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTAVESNVLRLHGRLSREY 437
                                    11        21        31        41        51        61        71        81        91       101      |  -|      121       131|  |   141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431      
                                                                                                                                    108 112                 132  |                                                                                                                                                                                                                                                                                                              
                                                                                                                                                               135

Chain B from PDB  Type:PROTEIN  Length:71
 aligned with HIPB_ECOLI | P23873 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:83
                                    15        25        35        45        55        65        75        85   
           HIPB_ECOLI     6 KIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAKNASPESTEQQNLEW  88
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.------------.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------HTH_CROC1  PDB: B:17-71 UniProt: 17-71                 ----------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                 2wiu B   6 KIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCD------------NLEW  86
                                    15        25        35        45        55        65      |  -        83   
                                                                                             72           83

Chain C from PDB  Type:PROTEIN  Length:401
 aligned with HIPA_ECOLI | P23874 from UniProtKB/Swiss-Prot  Length:440

    Alignment length:436
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431      
           HIPA_ECOLI     2 PKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMAWEKLTEARLEEVLTAYKADIPLGMIREENDFRISVAGAQEKTALLRIGNDWCIPKGITPTTHIIKLPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGNVRALAVERFDRRWNAERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGATDGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKGKKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTAVESNVLRLHGRLSREY 437
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --Couple_hipA-2wiuC01 C:4-104                                                                          ---            ------------        ----------HipA_N-2wiuC05 C:150-238                                                                 ----------HipA_C-2wiuC03         C:249-332                                                    -------------------------    ---------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) --Couple_hipA-2wiuC02 C:4-104                                                                          ---            ------------        ----------HipA_N-2wiuC06 C:150-238                                                                 ----------HipA_C-2wiuC04         C:249-332                                                    -------------------------    ---------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author .eeeeee..eeeeeeee.....eeeee.........................hhhhhhhhhh....hhhhhhhhhhhhh....hhhhhhhhhh......eeeee..------------.hhhhhhhhh..--------.............hhhhh.ee.................eeee....eeee..eeee..hhhhhhhhhhhhhhhh......eeee.---..eeeee...eee......eee..eeehhhhh...--------...hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh....hhhh.eeeeehhheeee........hhhh......hhhh.eeeeee.----.eee.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wiu C   2 PKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGNITSDAVFNFFDNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPED------------LTEARLEEVLTA--------MIREENDFRISVAGAQEKTALLRIGNDWCIPKGITPTTHIIKLPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIK---VRALAVERFDRRWNAERTVLLRLPQEDMCQTFGLP--------GGPGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGATDGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLN----KKTAIDKIYPRHFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTAVESNVLRLHGRLSREY 437
                                    11        21        31        41        51        61        71        81        91       101     |   -       121       131       141       151       161       171       181       191       201       211       221  |   |231       241       251       261|      271       281       291       301       311       321       331       341       351     |   -|      371       381       391       401       411       421       431      
                                                                                                                                   107          120        131      140                                                                                 224 228                               262      271                                                                                   357  362

Chain D from PDB  Type:PROTEIN  Length:71
 aligned with HIPB_ECOLI | P23873 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:84
                                    14        24        34        44        54        64        74        84    
           HIPB_ECOLI     5 QKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAKNASPESTEQQNLEW  88
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ------------HTH_3-2wiuD01 D:17-70                                 ------------------ Pfam domains (1)
           Pfam domains (2) ------------HTH_3-2wiuD02 D:17-70                                 ------------------ Pfam domains (2)
         Sec.struct. author ....hhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.-------------... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------HTH_CROC1  PDB: D:17-71 UniProt: 17-71                 ----------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                 2wiu D   5 QKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCD-------------LEW  86
                                    14        24        34        44        54        64       | -         - |  
                                                                                              72            84

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2WIU)

(no "CATH Domain" information available for 2WIU)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: HTH (544)

Family: HTH_3 (27)

Escherichia coli (strain K12) (1)

1a	HTH_3-2wiuD01	D:17-70
1b	HTH_3-2wiuD02	D:17-70

Clan: no clan defined [family: Couple_hipA] (1)

Family: Couple_hipA (1)

Escherichia coli (strain K12) (1)

2a	Couple_hipA-2wiuC01	C:4-104
2b	Couple_hipA-2wiuC02	C:4-104

Clan: no clan defined [family: HipA_C] (1)

Family: HipA_C (1)

Escherichia coli (strain K12) (1)

3a	HipA_C-2wiuC03	C:249-332
3b	HipA_C-2wiuC04	C:249-332

Clan: no clan defined [family: HipA_N] (1)

Family: HipA_N (1)

Escherichia coli (strain K12) (1)

4a	HipA_N-2wiuC05	C:150-238
4b	HipA_N-2wiuC06	C:150-238

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,C (HIPA_ECOLI | P23874)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004674	protein serine/threonine kinase activity	Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0022611	dormancy process	A developmental process in which dormancy (sometimes called a dormant state) is induced, maintained or broken. Dormancy is a suspension of most physiological activity and growth that can be reactivated.
	GO:0043086	negative regulation of catalytic activity	Any process that stops or reduces the activity of an enzyme.
	GO:0036289	peptidyl-serine autophosphorylation	The phosphorylation by a protein of one or more of its own serine amino acid residues, or a serine residue on an identical protein.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
	GO:0044010	single-species biofilm formation	A process in which planktonically growing microorganisms of the same species grow at a liquid-air interface or on a solid substrate under the flow of a liquid and produce extracellular polymers that facilitate matrix formation, resulting in a change in the organisms' growth rate and gene transcription.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Chain B,D (HIPB_ECOLI | P23873)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0000985	bacterial-type RNA polymerase core promoter sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in a bacterial-type RNA polymerase core promoter, the region composed of the transcription start site and binding sites for transcription factors of the basal transcription machinery, in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0043565	sequence-specific DNA binding	Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
biological process
	GO:0045892	negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.

Asymmetric/Biological Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		HG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2wiu)

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format \| Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2wiu
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	HIPA_ECOLI \| P23874
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	HIPB_ECOLI \| P23873
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	2.7.11.1
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	HIPA_ECOLI \| P23874
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	HIPB_ECOLI \| P23873
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

3dnt	STRUCTURES OF MDT PROTEINS
3dnu	STRUCTURE OF MDT PROTEIN
3dnv	MDT PROTEIN
3dnw	STRUCTURE OF MDT PROTEIN

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 17)

Sites (13, 13)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (4, 8)

Gene Ontology (20, 22)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File