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(-) Description

Title :  CCM2 HHD IN COMPLEX WITH MEKK3 NPB1
 
Authors :  O. S. Fisher, T. J. Boggon
Date :  11 Feb 15  (Deposition) - 01 Jul 15  (Release) - 12 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Complex, Kinase, Scaffold, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. S. Fisher, H. Deng, D. Liu, Y. Zhang, R. Wei, Y. Deng, F. Zhang, A. Louvi, B. E. Turk, T. J. Boggon, B. Su
Structure And Vascular Function Of Mekk3-Cerebral Cavernous Malformations 2 Complex.
Nat Commun V. 6 7937 2015
PubMed-ID: 26235885  |  Reference-DOI: 10.1038/NCOMMS8937

(-) Compounds

Molecule 1 - MALCAVERNIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET32
    Expression System Strain: ROSETTA (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CCM2, C7ORF22, PP10187
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CEREBRAL CAVERNOUS MALFORMATIONS 2 PROTEIN
 
Molecule 2 - MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 3
    Chains: B
    EC Number: 2.7.11.25
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCDF
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MAP3K3, MAPKKK3, MEKK3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAPK/ERK KINASE KINASE 3,MEKK 3

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4Y5O)

(-) Sites  (0, 0)

(no "Site" information available for 4Y5O)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Y5O)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg B:62 -Pro B:63

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Y5O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Y5O)

(-) Exons   (0, 0)

(no "Exon" information available for 4Y5O)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:78
                                                                                                              
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 4y5o A 293 ASATELLQDYMLTLRTKLSSQEIQQFAALLHEYRNGASIHEFCINLRQLYGDSRKFLLLGLRPFIPEKDSQHFENFLE 370
                                   302       312       322       332       342       352       362        


Chain B from PDB  Type:PROTEIN  Length:103
                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.......eeeeeee..eeeeeee....hhhhhhhhhhhhhh...eeee.hhhhhee..hhhhhhhhhhhhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 4y5o B   0 SMDEQEALNSIMNDLVALQMQSDVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRSSSMKSLRILLLSQD 124
                                     9        19|       51        61        71        81        91       101       111       121   
                                              19|                                                                                  
                                               42
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Y5O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Y5O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Y5O)

(-) Gene Ontology  (36, 39)

Asymmetric/Biological Unit(hide GO term definitions)

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(no "Sites" information available for 4y5o)
 
  Cis Peptide Bonds
    Arg B:62 - Pro B:63   [ RasMol ]  
 

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  4y5o
    Family and Domain Information: ProDom | SYSTERS
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  CCM2_HUMAN | Q9BSQ5
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  M3K3_HUMAN | Q99759
    Comparative Protein Structure Models: ModBase
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  2.7.11.25
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  CCM2_HUMAN | Q9BSQ5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CCM2_HUMAN | Q9BSQ5: 4fqn 4tvq 4wj7 4ykc 4ykd 4yl6
        M3K3_HUMAN | Q99759: 2c60 2jrh 2o2v 2pph 4yl6

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4Y5O)