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(-) Description

Title :  STRUCTURE OF THE HEPATITIS C VIRUS ENVELOPE GLYCOPROTEIN E2 ANTIGENIC 2 REGION 412-423 BOUND TO THE BROADLY NEUTRALIZING ANTIBODY HC33.1
 
Authors :  Y. Li, R. A. Mariuzza
Date :  27 Jan 15  (Deposition) - 11 Mar 15  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,H,L
Keywords :  Antibody-Antigen Complex, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Li, B. G. Pierce, Q. Wang, Z. Y. Keck, T. R. Fuerst, S. K. Foung, R. A. Mariuzza
Structural Basis For Penetration Of The Glycan Shield Of Hepatitis C Virus E2 Glycoprotein By A Broadly Neutralizing Human Antibody.
J. Biol. Chem. V. 290 10117 2015
PubMed-ID: 25737449  |  Reference-DOI: 10.1074/JBC.M115.643528

(-) Compounds

Molecule 1 - HCV E2 ANTIGEN
    Chains: A
    Engineered: YES
    Fragment: UNP RESIDUES 412-423
    Organism Scientific: HEPATITIS C VIRUS
    Organism Taxid: 11103
    Synthetic: YES
 
Molecule 2 - ANTIBODY HEAVY CHAIN VARIABLE DOMAIN
    Chains: H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET26B
    Expression System Taxid: 562
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - ANTIBODY LIGHT CHAIN VARIABLE DOMAIN
    Chains: L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : AHL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4XVJ)

(-) Sites  (0, 0)

(no "Site" information available for 4XVJ)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1H:22 -H:96
2L:22 -L:89

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XVJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XVJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XVJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4XVJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ...ee........ Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 4xvj A   1 RQLINTNGSWHIN 423
                            ||     420   
                            ||           
                            1|           
                           412           


Chain H from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...ee.....eeeeeeee.......eeeeeee.....eeeeeeee.....eee.......eeeee.....eeeeee...hhhhheeeeeeeeeeee......eeeeeeee...eeeee........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xvj H   0 MEVQLVESGGGLVQPGGSLRLSCVASGLTFTNFAVSWVRQAPGKGLEWVSAISSSDGSTYYSDSVKGRFTISRDSSMNTLYLQMDSLRVEDTAVYFCARAVVSSDITYTYWSKYFDYWGQGTLVTVSSGSTGGGGSG 136
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       


Chain L from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeee.....eeeeee...........eeeee......eeee.............eeeeee..eeeeee...hhhhheeeeeeeee....eeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 4xvj L  -3 GGGSQSVVTQPPSVSAAPGQKVTISCSGGSFNIGNNYVSWYQQLPGTAPKLLIYDNDNRPSGIPDRFSGSKSGTSATLDITGLQTGDEADYYCGTWDSSLNVVVFGGGTKLTVL 110
                                     6        16        26        36        46        56        66        76        86        96       106
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XVJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XVJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XVJ)

(-) Gene Ontology  (143, 143)

Asymmetric/Biological Unit(hide GO term definitions)

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  4xvj
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  POLG_HCVH | P27958
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLG_HCVH | P27958: 1a1r 1a1v 1cwx 1hei 1jr6 1n1l 1onb 1r7c 1r7d 1r7e 1r7f 1r7g 1rgq 2a4r 2f9v 2hd0 2jxf 2kdr 2n1p 2o8m 2obo 2obq 2oc0 2oc1 2oc7 2oc8 2oin 2p59 2qv1 2xi2 2xi3 2xni 4cl1 4jzn 4jzo 4mwf 4n0y 4q0x 4z0x 5eoc 5erw 5fgb 5fgc

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4XVJ)