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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN PHOSPHATE 1 COMPLEXED WITH PP1 BINDING DOMAIN OF GADD34
 
Authors :  M. S. Choy, W. Peti, R. Page
Date :  17 Jan 15  (Deposition) - 01 Jul 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.29
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Eif2Alpha Phosphatase, Pp1 Regulator, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. S. Choy, P. Yusoff, I. C. Lee, J. C. Newton, C. W. Goh, R. Page, S. Shenolikar, W. Peti
Structural And Functional Analysis Of The Gadd34:Pp1 Eif2 Alpha Phosphatase.
Cell Rep V. 11 1885 2015
PubMed-ID: 26095357  |  Reference-DOI: 10.1016/J.CELREP.2015.05.043

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN PHOSPHATASE PP1-ALPHA CATALYTIC SUBUNIT
    Chains: A, C
    EC Number: 3.1.3.16
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 7-300
    Gene: PPP1CA, PPP1A
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PP-1A
 
Molecule 2 - PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 15A
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 552-591
    Gene: PPP1R15A, GADD34
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD34, MYELOID DIFFERENTIATION PRIMARY RESPONSE PROTEIN MYD116 HOMOLOG

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MN4Ligand/IonMANGANESE (II) ION
3PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MN-1Ligand/IonMANGANESE (II) ION
3PO41Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MN-1Ligand/IonMANGANESE (II) ION
3PO41Ligand/IonPHOSPHATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:64 , HIS A:66 , ASP A:92 , MN A:402 , PO4 A:403 , HOH A:624binding site for residue MN A 401
2AC2SOFTWAREASP A:92 , ASN A:124 , HIS A:173 , HIS A:248 , MN A:401 , PO4 A:403 , HOH A:624binding site for residue MN A 402
3AC3SOFTWAREHIS A:66 , ASP A:92 , ASN A:124 , HIS A:125 , ARG A:221 , HIS A:248 , MN A:401 , MN A:402 , HOH A:624binding site for residue PO4 A 403
4AC4SOFTWAREPRO A:50 , GLU A:54 , GLU A:116binding site for residue GOL A 404
5AC5SOFTWAREASP C:92 , ASN C:124 , HIS C:173 , HIS C:248 , MN C:402 , PO4 C:403 , HOH C:588binding site for residue MN C 401
6AC6SOFTWAREASP C:64 , HIS C:66 , ASP C:92 , MN C:401 , PO4 C:403 , HOH C:588 , HOH C:589binding site for residue MN C 402
7AC7SOFTWAREHIS C:66 , ASP C:92 , ASN C:124 , HIS C:125 , ARG C:221 , HIS C:248 , TYR C:272 , MN C:401 , MN C:402 , HOH C:560 , HOH C:561 , HOH C:588 , HOH C:589binding site for residue PO4 C 403
8AC8SOFTWARESER C:129 , VAL C:195 , VAL C:223 , HOH C:558binding site for residue GOL C 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XPN)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Met A:4 -Gly A:5
2Ala A:57 -Pro A:58
3Pro A:82 -Pro A:83
4Arg A:191 -Pro A:192
5Ala C:57 -Pro C:58
6Pro C:82 -Pro C:83
7Arg C:191 -Pro C:192

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XPN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XPN)

(-) Exons   (0, 0)

(no "Exon" information available for 4XPN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:296
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhh..eeee...eeee.....hhhhhhhhhhhhh......eee.........hhhhhhhhhhhhhhhh...eee......hhhhhh..hhhhhhhhhhhhhhhhhhhhhhh....eeee...eeee..........hhhhhh..........hhhhhhhhhee......eee......eeehhhhhhhhhhhh...eeee........eeee....eeee....hhhhh....eeeeee....eeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xpn A   4 MGSLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPA 299
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293      


Chain B from PDB  Type:PROTEIN  Length:16
                                                
               SCOP domains ---------------- SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author ....ee....eee... Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                 4xpn B 553 ARKVRFSEKVTVHFLA 568
                                   562      


Chain C from PDB  Type:PROTEIN  Length:294
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhh..eeee...eeee.....hhhhhhhhhhhhh......eee.........hhhhhhhhhhhhhhhh...eee......hhhhhh..hhhhhhhhhhhhhhhhhhhhhhh....eeee...eeee..........hhhhhh..........hhhhhhhhhee......eee......eeehhhhhhhhhhhh...eeee........eeee....eeee....hhhhh....eeeeee....eeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xpn C   6 SLNLDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPA 299
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295    


Chain D from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author ...ee....eee.. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 4xpn D 554 RKVRFSEKVTVHFL 567
                                   563
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XPN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XPN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XPN)

(-) Gene Ontology  (96, 102)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        PP1A_HUMAN | P62136: 1fjm 3e7a 3e7b 3egg 3egh 3hvq 3n5u 3v4y 4g9j 4mov 4moy 4mp0 5ioh

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