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(-) Description

Title :  CRYSTAL STRUCTURE OF E112A/D230A MUTANT OF STATIONARY PHASE SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM
 
Authors :  Y. K. Mathiharan, M. R. N. Murthy
Date :  05 Jan 15  (Deposition) - 09 Sep 15  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.56
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Stationary Phase Survival Protein, Domain Swapping, Rossmann Fold Like, Phosphatase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. K. Mathiharan, H. S. Savithri, M. R. N. Murthy
Insights Into Stabilizing Interactions In The Distorted Domain-Swapped Dimer Of Salmonella Typhimurium Survival Protein
Acta Crystallogr. , Sect. D V. 71 1812 2015
PubMed: search  |  Reference-DOI: 10.1107/S1399004715011992

(-) Compounds

Molecule 1 - 5'/3'-NUCLEOTIDASE SURE
    Chains: A, B
    EC Number: 3.1.3.5, 3.1.3.6, 3.6.1.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSETC
    Expression System Strain: BL21-PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SURE, STM2927
    Mutation: YES
    Organism Scientific: SALMONELLA TYPHIMURIUM LT2
    Organism Taxid: 99287
    Strain: LT2
    Synonym: EXOPOLYPHOSPHATASE,NUCLEOSIDE MONOPHOSPHATE PHOSPHOHYDROLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4XH8)

(-) Sites  (0, 0)

(no "Site" information available for 4XH8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XH8)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Arg A:81 -Pro A:82
2Gly A:90 -Ile A:91
3Phe A:118 -Pro A:119
4Arg B:81 -Pro B:82
5Gly B:90 -Ile B:91

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XH8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XH8)

(-) Exons   (0, 0)

(no "Exon" information available for 4XH8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee.......hhhhhhhhhhhh...eeeeeee.................eeee.....eeee..hhhhhhhhhhhh..........eeeee...hhhhh..hhhhhhh..........eeeeee...hhhhhhhhhhhhhhhhhhh......eeeeee........eeee....ee.....eeeee.....eeeee.....eee....hhhhhhhhheeeee.......hhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xh8 A  -7 HHHHGMASMRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMAGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVALSAHDVVSDWLDSVGVGTQW 253
                                     2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152|      163       173       183       193       203       213       223       236       246       
                                                                                                                                                                                         152|                                                                          231|                  
                                                                                                                                                                                          154                                                                           235                  


Chain B from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhhhhhh.eeeeeeee.................eeee.....eeee..hhhhhhhhhhhh.......eeeeeeee...hhhhhhhhhhhhh...........eeeeee...hhhhhhhhhhhhhhhhhhh......eeeeeee........eeee....ee.....eeeee....eeeee.....eee...hhhhhhhhheeeeeee...hhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xh8 B   0 SMRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMAGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPGNTLYWIGPPGDKYDAPDTDFAAVDEGYVSVTPLHVSAHDVVSDWLDSVGVGTQW 253
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189 ||    200       211       221       236       246       
                                                                                                                                                                                                                         191|            208|                229|                  
                                                                                                                                                                                                                          193             210                 235
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XH8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XH8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XH8)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 4xh8)
 
  Cis Peptide Bonds
    Arg A:81 - Pro A:82   [ RasMol ]  
    Arg B:81 - Pro B:82   [ RasMol ]  
    Gly A:90 - Ile A:91   [ RasMol ]  
    Gly B:90 - Ile B:91   [ RasMol ]  
    Phe A:118 - Pro A:119   [ RasMol ]  
 

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  4xh8
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  SURE_SALTY | P66881
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  3.1.3.5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SURE_SALTY | P66881: 2v4n 2v4o 4g9o 4gad 4ryt 4ryu 4xep 4xer 4xgb 4xgp 4xj7

(-) Related Entries Specified in the PDB File

4g9o CRYSTAL STRUCTURE OF H234A MUTANT OF STATIONARY PHASE SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM
4gad CRYSTAL STRUCTURE OF D230A/H234A MUTANT OF STATIONARY PHASE SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM
4ryt CRYSTAL STRUCTURE OF F222 FORM OF E112A MUTANT OF STATIONARY PHASE SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM
4ryu CRYSTAL STRUCTURE OF C2 FORM OF E112A MUTANT OF STATIONARY PHASE SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM
4xep CRYSTAL STRUCTURE OF F222 FORM OF E112A/H234A MUTANT OF STATIONARY PHASE SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM
4xer CRYSTAL STRUCTURE OF C2 FORM OF E112A/H234A MUTANT OF STATIONARY PHASE SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM
4xgb
4xgp