4XGB - JenaLib

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Title :   CRYSTAL STRUCTURE OF E112A/H234A MUTANT OF STATIONARY PHASE SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM CO-CRYSTALLIZED WITH AMP

Authors :   Y. K. Mathiharan, M. R. N. Murthy

Date :   30 Dec 14 (Deposition) - 09 Sep 15 (Release) - 09 Sep 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.23

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Stationary Phase Survival Protein, Domain Swapping, Rossmann Fold Like, Phosphatase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. K. Mathiharan, H. S. Savithri, M. R. N. Murthy
Insights Into Stabilizing Interactions In The Distorted Domain-Swapped Dimer Of Salmonella Typhimurium Survival Protein
Acta Crystallogr. , Sect. D V. 71 1812 2015
PubMed: search | Reference-DOI: 10.1107/S1399004715011992

Molecule 1 - 5'/3'-NUCLEOTIDASE SURE
	Chains	:	A, B, C, D
	EC Number	:	3.1.3.5, 3.1.3.6, 3.6.1.11
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PRSETC
	Expression System Strain	:	BL21-PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	SURE, STM2927
	Mutation	:	YES
	Organism Scientific	:	SALMONELLA TYPHIMURIUM LT2
	Organism Taxid	:	99287
	Strain	:	LT2
	Synonym	:	EXOPOLYPHOSPHATASE,NUCLEOSIDE MONOPHOSPHATE PHOSPHOHYDROLASE

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 8)

No.	Name	Count	Type	Full Name
1	MG	4	Ligand/Ion	MAGNESIUM ION
2	MPD	1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
3	PO4	3	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MPD	1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
3	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MPD	-1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:8 , ASP A:9 , SER A:39 , ASN A:92 , PO4 A:302 , HOH A:650	binding site for residue MG A 301
2	AC2	SOFTWARE	ASP A:8 , GLY A:40 , ASN A:92 , ASN A:96 , SER A:104 , GLY A:105 , THR A:106 , MG A:301 , HOH A:658	binding site for residue PO4 A 302
3	AC3	SOFTWARE	ASP B:8 , ASP B:9 , SER B:39 , ASN B:92 , PO4 B:302 , HOH B:640	binding site for residue MG B 301
4	AC4	SOFTWARE	ASP B:8 , SER B:39 , GLY B:40 , ASN B:92 , ASN B:96 , SER B:104 , GLY B:105 , THR B:106 , MG B:301 , HOH B:626 , HOH B:631	binding site for residue PO4 B 302
5	AC5	SOFTWARE	ASP B:100 , GLY B:200 , PRO B:202 , HOH B:639 , HOH B:641	binding site for residue MPD B 303
6	AC6	SOFTWARE	ASP C:8 , ASP C:9 , ASN C:92 , HOH C:563 , HOH C:565 , HOH C:566	binding site for residue MG C 301
7	AC7	SOFTWARE	ASP D:8 , ASP D:9 , SER D:39 , ASN D:92 , PO4 D:302	binding site for residue MG D 301
8	AC8	SOFTWARE	ASP D:8 , SER D:39 , GLY D:40 , ASN D:92 , ASN D:96 , SER D:104 , GLY D:105 , THR D:106 , MG D:301 , HOH D:540 , HOH D:542	binding site for residue PO4 D 302

(no "SS Bond" information available for 4XGB)

Asymmetric Unit

No.	Residues
1	Arg A:81	-	Pro A:82
2	Gly A:90	-	Ile A:91
3	Arg B:81	-	Pro B:82
4	Gly B:90	-	Ile B:91
5	Arg C:81	-	Pro C:82
6	Gly C:90	-	Ile C:91
7	Arg D:81	-	Pro D:82
8	Gly D:90	-	Ile D:91

(no "SAP(SNP)/Variant" information available for 4XGB)

(no "PROSITE Motif" information available for 4XGB)

(no "Exon" information available for 4XGB)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee......hhhhhhhhhhhh...eeeeeee.................eeee.....eeee..hhhhhhhhhhhh.......eeeeeeee...hhhhhhhhhhhhhhhh.......eeeeeee...hhhhhhhhhhhhhhhhhhh......eeeeeee..hhhhh.eeee....ee.....eeeee.....eeeee.....eee....hhhhhhhh.eeeeeee.....hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xgb A  -8 HHHHHGMASMRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMAGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAASAHDVVSDWLDSVGVGTQW 253
                                     1        11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Chain B from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee......hhhhhhhhhhhhh.eeeeeeee.................eeee.....eeee..hhhhhhhhhhhh.......eeeeeeee...hhhhh..hhhhhhhhh.......eeeeee....hhhhhhhhhhhhhhhhhhh......eeeeee...hhhhh.eeee....ee.....eeeee.....eeeee.....eee....hhhhhhhh.eeeeeee.....hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xgb B  -3 GMASMRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMAGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAASAHDVVSDWLDSVGVGTQW 253
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246

Chain C from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee......hhhhhhhhhhhhh..eeeeeee.................eeee.....eeee..hhhhhhhhhhhh.......eeeeeeee...hhhhh..hhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhhhh......eeeeee...hhhhh.eeee...........eeeee.....eeeee............hhhhhhhh.eeeeeee.....hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xgb C  -1 ASMRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMAGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAASAHDVVSDWLDSVGVGTQW 253
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248

Chain D from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhhhhhh.eeeeeeee.................eeee.....eeee..hhhhhhhhhhhh.......eeeeeeee...hhhhhhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhhhh......eeeeee...hhhhh.eeee...........eeeee.....eeeee............hhhhhhhh.eeeeeee.....hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xgb D   0 SMRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMAGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAASAHDVVSDWLDSVGVGTQW 253
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4XGB)

(no "CATH Domain" information available for 4XGB)

(no "Pfam Domain" information available for 4XGB)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
	Complete Structure
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		RasMol (require local installation)
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	Ligands, Modified Residues, Ions
		MG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MPD	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Arg A:81 - Pro A:82	[ RasMol ]
		Arg B:81 - Pro B:82	[ RasMol ]
		Arg C:81 - Pro C:82	[ RasMol ]
		Arg D:81 - Pro D:82	[ RasMol ]
		Gly A:90 - Ile A:91	[ RasMol ]
		Gly B:90 - Ile B:91	[ RasMol ]
		Gly C:90 - Ile C:91	[ RasMol ]
		Gly D:90 - Ile D:91	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
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	4xgb
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		Orientation in Membranes	:	OPM
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		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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	3.1.3.5
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	3.1.3.6
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
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	3.6.1.11
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		Interatomic Contacts of Structural Units	:	CSU
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	SURE_SALTY \| P66881	:	2v4n 2v4o 4g9o 4gad 4ryt 4ryu 4xep 4xer 4xgp 4xh8 4xj7

4g9o	CRYSTAL STRUCTURE OF H234A MUTANT OF STATIONARY PHASE SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM
4xep	CRYSTAL STRUCTURE OF F222 FORM OF E112A/H234A MUTANT OF STATIONARY PHASE SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM
4xer	CRYSTAL STRUCTURE OF C2 FORM OF E112A/H234A MUTANT OF STATIONARY PHASE SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM
4xgp

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File