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(-) Description

Title :  CRYSTAL STRUCTURE OF F222 FORM OF E112A MUTANT OF STATIONARY PHASE SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM
 
Authors :  Y. K. Mathiharan, M. R. N. Murthy
Date :  17 Dec 14  (Deposition) - 09 Sep 15  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.09
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Stationary Phase Survival Protein, Domain Swapping, Rossmann Fold Like, Phosphatase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. K. Mathiharan, H. S. Savithri, M. R. N. Murthy
Insights Into Stabilizing Interactions In The Distorted Domain-Swapped Dimer Of Salmonella Typhimurium Survival Protein
Acta Crystallogr. , Sect. D V. D71 1812 2015
PubMed: search  |  Reference-DOI: 10.1107/S1399004715011992

(-) Compounds

Molecule 1 - 5'/3'-NUCLEOTIDASE SURE
    Chains: A
    EC Number: 3.1.3.5, 3.1.3.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSETC
    Expression System Strain: BL21-PLYSS
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: SURE
    Mutation: YES
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 99287
    Strain: LT2
    Synonym: EXOPOLYPHOSPHATASE, NUCLEOSIDE MONOPHOSPHATE PHOSPHOHYDROLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric Unit (3, 7)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2MG1Ligand/IonMAGNESIUM ION
3PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1EDO8Ligand/Ion1,2-ETHANEDIOL
2MG-1Ligand/IonMAGNESIUM ION
3PO44Ligand/IonPHOSPHATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:8 , ASP A:9 , SER A:39 , ASN A:92 , HOH A:401 , HOH A:511BINDING SITE FOR RESIDUE MG A 301
2AC2SOFTWAREPRO A:95 , ASN A:96 , ASP A:100 , HOH A:401 , HOH A:402 , HOH A:403BINDING SITE FOR RESIDUE PO4 A 302
3AC3SOFTWAREASP A:100 , TYR A:103 , PRO A:202 , HOH A:487 , HOH A:545 , HOH A:616 , HOH A:659BINDING SITE FOR RESIDUE PO4 A 303
4AC4SOFTWARELEU A:97 , ASN A:126 , LYS A:205 , PHE A:214 , ASP A:218BINDING SITE FOR RESIDUE EDO A 304
5AC5SOFTWAREILE A:171 , SER A:241 , ASP A:245 , HOH A:411 , HOH A:441BINDING SITE FOR RESIDUE EDO A 305
6AC6SOFTWAREASN A:77 , ALA A:112 , ALA A:182 , HOH A:534 , HOH A:584BINDING SITE FOR RESIDUE EDO A 306
7AC7SOFTWARETYR A:206 , HOH A:504BINDING SITE FOR RESIDUE EDO A 307

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RYT)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Arg A:81 -Pro A:82
2Gly A:90 -Ile A:91

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RYT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RYT)

(-) Exons   (0, 0)

(no "Exon" information available for 4RYT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhhhhhh.eeeeeeee.................eeee.....eeee..hhhhhhhhhhhh.......eeeeeeee...hhhhhhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhhhh......eeeeee...hhhhh.eeee....ee.....eeeee.....eeeee.....eee....hhhhhhhh.eeeeeee.....hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ryt A   0 SMRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMAGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW 253
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RYT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RYT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RYT)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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  SURE_SALTY | P66881
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SURE_SALTY | P66881: 2v4n 2v4o 4g9o 4gad 4ryu 4xep 4xer 4xgb 4xgp 4xh8 4xj7

(-) Related Entries Specified in the PDB File

2v4n CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM SURE AT 1.7 ANGSTROM RESOLUTION IN ORTHORHOMBIC FORM
2v4o CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM SURE AT 2.75 ANGSTROM RESOLUTION IN MONOCLINIC FORM.
4g9o CRYSTAL STRUCTURE OF H234A MUTANT OF STATIONARY PHASE SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM
4gad CRYSTAL STRUCTURE OF D230A/H234A MUTANT OF STATIONARY PHASE SURVIVAL PROTEIN (SURE) FROM SALMONELLA TYPHIMURIUM
4ryu