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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN ADAMTS-4 IN COMPLEX WITH INHIBITOR (COMPOUND 1, 2-(4-CHLOROPHENOXY)-N-{[(4R)-4-METHYL-2,5-DIOXOIMIDAZOLIDIN-4-YL]METHYL} ACETAMIDE)
 
Authors :  J. D. Durbin, S. L. Stout
Date :  01 Oct 14  (Deposition) - 10 Dec 14  (Release) - 14 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.24
Chains :  Asym./Biol. Unit :  A
Keywords :  Metalloprotease, Osteoarthritis, Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. B. Durham, V. J. Klimkowski, C. J. Rito, J. Marimuthu, J. L. Toth, C. Liu, J. D. Durbin, S. L. Stout, L. Adams, C. Swearingen, C. Lin, M. G. Chambers, K. Thirunavukkarasu, M. R. Wiley
Identification Of Potent And Selective Hydantoin Inhibitors Of Aggrecanase-1 And Aggrecanase-2 That Are Efficacious In Both Chemical And Surgical Models Of Osteoarthritis.
J. Med. Chem. V. 57 10476 2014
PubMed-ID: 25415648  |  Reference-DOI: 10.1021/JM501522N

(-) Compounds

Molecule 1 - A DISINTEGRIN AND METALLOPROTEINASE WITH THROMBOSPONDIN MOTIFS 4
    Chains: A
    EC Number: 3.4.24.82
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 213-439
    Gene: ADAMTS4, KIAA0688, UNQ769/PRO1563
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ADAMTS-4,ADMP-1,AGGRECANASE-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
13PQ1Ligand/Ion2-(4-CHLOROPHENOXY)-N-{[(4R)-4-METHYL-2,5-DIOXOIMIDAZOLIDIN-4-YL]METHYL}ACETAMIDE
2CA3Ligand/IonCALCIUM ION
3ZN1Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:361 , HIS A:365 , HIS A:371 , 3PQ A:505binding site for residue ZN A 501
2AC2SOFTWAREGLU A:221 , ASP A:304 , ASP A:311 , CYS A:423 , ASP A:426 , HOH A:686binding site for residue CA A 502
3AC3SOFTWAREGLU A:221 , ASP A:304 , ASP A:426 , HOH A:691 , HOH A:696binding site for residue CA A 503
4AC4SOFTWAREASP A:320 , LEU A:321 , CYS A:327 , THR A:329 , GLU A:349 , HOH A:699binding site for residue CA A 504
5AC5SOFTWARETHR A:329 , LEU A:330 , GLY A:331 , HIS A:361 , GLU A:362 , HIS A:365 , HIS A:371 , VAL A:390 , ALA A:392 , PRO A:393 , VAL A:394 , MET A:395 , VAL A:398 , ZN A:501 , HOH A:685binding site for residue 3PQ A 505

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:293 -A:345
2A:322 -A:327
3A:339 -A:423
4A:377 -A:407

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WK7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WK7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WK7)

(-) Exons   (0, 0)

(no "Exon" information available for 4WK7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee.......hhhhhhhhhhhhhhh.............eeeeee.............eee...........eeeee....hhhhhhhhhhhhhh......hhhhhhhhh....................hhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wk7 A 217 SRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVILGPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADVGTVCDPARSCAIVEDDGLQSAFTAAHELGHVFNMLHDNSKPCISLNGPLSRHVMAPVMAHVDPEEPWSPCSARFITDFLDNGYGHCLLDKPEAPL 432
                                   226       236       246       256       266     ||281       291       301       311       321       331       341       351       361       371       381  ||   393       403       413       423         
                                                                                 272|                                                                                                       384|                                             
                                                                                  278                                                                                                        387
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WK7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WK7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WK7)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ATS4_HUMAN | O75173: 2rjp 3b2z 4wke 4wki

(-) Related Entries Specified in the PDB File

4wke 4wki