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Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF ADAMTS4 WITH INHIBITOR BOUND

Authors :   L. Mosyak, M. Stahl, W. Somers

Date :   15 Oct 07 (Deposition) - 11 Dec 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Metalloprotease Domain, Aggrecanase, Cleavage On Pair Of Basic Residues, Extracellular Matrix, Glycoprotein, Hydrolase, Metal-Binding, Polymorphism, Secreted, Zinc, Zymogen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Mosyak, K. Georgiadis, T. Shane, K. Svenson, T. Hebert, T. Mcdonagh, S. Mackie, S. Olland, L. Lin, X. Zhong, R. Kriz, E. L. Reifenberg, L. A. Collins-Racie, C. Corcoran, B. Freeman, R. Zollner, T. Marvell, M. Vera, P. E. Sum, E. R. Lavallie, M. Stahl, W. Somers
Crystal Structures Of The Two Major Aggrecan Degrading Enzymes, Adamts4 And Adamts5.
Protein Sci. V. 17 16 2008
PubMed-ID: 18042673 | Reference-DOI: 10.1110/PS.073287008
(for further references see the PDB file header)

Molecule 1 - ADAMTS-4
	Chains	:	A, B, C, D
	EC Number	:	3.4.24.82
	Engineered	:	YES
	Expression System	:	CRICETULUS GRISEUS
	Expression System Cell Line	:	OVARY (CHO) CELLS
	Expression System Common	:	CHINESE HAMSTER
	Expression System Taxid	:	10029
	Fragment	:	RESIDUES 213-520
	Gene	:	ADAMTS4, KIAA0688
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	A DISINTEGRIN AND METALLOPROTEINASE WITH THROMBOSPONDIN MOTIFS 4, ADAM-TS 4, ADAM-TS4, AGGRECANASE- 1, ADMP-1

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 20)

No.	Name	Count	Type	Full Name
1	886	4	Ligand/Ion	N-({4'-[(4-ISOBUTYRYLPHENOXY)METHYL]BIPHENYL-4-YL}SULFONYL)-D-VALINE
2	CA	12	Ligand/Ion	CALCIUM ION
3	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	886	1	Ligand/Ion	N-({4'-[(4-ISOBUTYRYLPHENOXY)METHYL]BIPHENYL-4-YL}SULFONYL)-D-VALINE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	886	1	Ligand/Ion	N-({4'-[(4-ISOBUTYRYLPHENOXY)METHYL]BIPHENYL-4-YL}SULFONYL)-D-VALINE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	886	1	Ligand/Ion	N-({4'-[(4-ISOBUTYRYLPHENOXY)METHYL]BIPHENYL-4-YL}SULFONYL)-D-VALINE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	886	1	Ligand/Ion	N-({4'-[(4-ISOBUTYRYLPHENOXY)METHYL]BIPHENYL-4-YL}SULFONYL)-D-VALINE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:361 , HIS A:365 , HIS A:371 , 886 A:510	BINDING SITE FOR RESIDUE ZN A 1
02	AC2	SOFTWARE	ASP A:320 , LEU A:321 , CYS A:327 , THR A:329 , GLU A:349	BINDING SITE FOR RESIDUE CA A 2
03	AC3	SOFTWARE	GLU A:221 , ASP A:304 , ASP A:311 , CYS A:423 , ASP A:426	BINDING SITE FOR RESIDUE CA A 3
04	AC4	SOFTWARE	HOH A:57 , GLU A:221 , ASP A:304 , ASP A:426	BINDING SITE FOR RESIDUE CA A 4
05	AC5	SOFTWARE	HIS B:361 , HIS B:365 , HIS B:371 , 886 B:510	BINDING SITE FOR RESIDUE ZN B 1
06	AC6	SOFTWARE	ASP B:320 , LEU B:321 , CYS B:327 , THR B:329 , GLU B:349	BINDING SITE FOR RESIDUE CA B 2
07	AC7	SOFTWARE	GLU B:221 , ASP B:304 , ASP B:311 , CYS B:423 , ASP B:426	BINDING SITE FOR RESIDUE CA B 3
08	AC8	SOFTWARE	GLU B:221 , ASP B:304 , ASP B:426	BINDING SITE FOR RESIDUE CA B 4
09	AC9	SOFTWARE	HIS C:361 , HIS C:365 , HIS C:371 , 886 C:510	BINDING SITE FOR RESIDUE ZN C 1
10	BC1	SOFTWARE	ASP C:320 , LEU C:321 , CYS C:327 , THR C:329 , GLU C:349	BINDING SITE FOR RESIDUE CA C 2
11	BC2	SOFTWARE	GLU C:221 , ASP C:304 , ASP C:311 , CYS C:423 , ASP C:426	BINDING SITE FOR RESIDUE CA C 3
12	BC3	SOFTWARE	HOH C:33 , GLU C:221 , ASP C:304 , ASP C:426	BINDING SITE FOR RESIDUE CA C 4
13	BC4	SOFTWARE	HIS D:361 , HIS D:365 , HIS D:371 , 886 D:510	BINDING SITE FOR RESIDUE ZN D 1
14	BC5	SOFTWARE	ASP D:320 , LEU D:321 , CYS D:327 , THR D:329 , GLU D:349	BINDING SITE FOR RESIDUE CA D 2
15	BC6	SOFTWARE	GLU D:221 , ASP D:304 , ASP D:311 , CYS D:423 , ASP D:426	BINDING SITE FOR RESIDUE CA D 3
16	BC7	SOFTWARE	GLU D:221 , ASP D:304 , ASP D:426	BINDING SITE FOR RESIDUE CA D 4
17	BC8	SOFTWARE	ZN B:1 , ALA B:252 , THR B:329 , LEU B:330 , GLY B:331 , PHE B:357 , HIS B:361 , GLN B:362 , HIS B:365 , HIS B:371 , VAL B:390 , ALA B:392 , PRO B:393 , VAL B:394 , VAL B:398 , HOH B:527 , HOH B:532 , HOH B:536	BINDING SITE FOR RESIDUE 886 B 510
18	BC9	SOFTWARE	ZN D:1 , THR D:329 , LEU D:330 , GLY D:331 , MET D:332 , PHE D:357 , HIS D:361 , GLN D:362 , HIS D:365 , HIS D:371 , VAL D:390 , ALA D:392 , PRO D:393 , VAL D:394 , MET D:395 , VAL D:398	BINDING SITE FOR RESIDUE 886 D 510
19	CC1	SOFTWARE	ZN C:1 , ALA C:252 , THR C:329 , LEU C:330 , GLY C:331 , MET C:332 , PHE C:357 , HIS C:361 , GLN C:362 , HIS C:365 , HIS C:371 , VAL C:390 , ALA C:392 , PRO C:393 , MET C:395 , VAL C:398	BINDING SITE FOR RESIDUE 886 C 510
20	CC2	SOFTWARE	ZN A:1 , ALA A:252 , THR A:329 , LEU A:330 , GLY A:331 , MET A:332 , PHE A:357 , HIS A:361 , GLN A:362 , HIS A:365 , HIS A:371 , VAL A:390 , ALA A:392 , PRO A:393 , VAL A:394 , VAL A:398	BINDING SITE FOR RESIDUE 886 A 510

Asymmetric Unit

No.	Residues
1	A:293	-	A:345
2	A:322	-	A:327
3	A:339	-	A:423
4	A:377	-	A:407
5	A:449	-	A:472
6	A:460	-	A:482
7	A:467	-	A:501
8	A:495	-	A:506
9	B:322	-	B:327
10	B:339	-	B:423
11	B:377	-	B:407
12	B:449	-	B:472
13	B:460	-	B:482
14	B:467	-	B:501
15	B:495	-	B:506
16	C:293	-	C:345
17	C:322	-	C:327
18	C:339	-	C:423
19	C:377	-	C:407
20	C:449	-	C:472
21	C:460	-	C:482
22	C:467	-	C:501
23	C:495	-	C:506
24	D:293	-	D:345
25	D:339	-	D:423
26	D:377	-	D:407
27	D:449	-	D:472
28	D:460	-	D:482
29	D:467	-	D:501
30	D:495	-	D:506

(no "Cis Peptide Bond" information available for 2RJP)

Asymmetric Unit (2, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_030637	D	304	N	ATS4_HUMAN	Polymorphism	17855813	A/B/C/D	D	304	N
2	UniProt	VAR_030638	M	369	V	ATS4_HUMAN	Polymorphism	17855812	A/B/C/D	M	369	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_030637	D	304	N	ATS4_HUMAN	Polymorphism	17855813	A	D	304	N
2	UniProt	VAR_030638	M	369	V	ATS4_HUMAN	Polymorphism	17855812	A	M	369	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_030637	D	304	N	ATS4_HUMAN	Polymorphism	17855813	B	D	304	N
2	UniProt	VAR_030638	M	369	V	ATS4_HUMAN	Polymorphism	17855812	B	M	369	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_030637	D	304	N	ATS4_HUMAN	Polymorphism	17855813	C	D	304	N
2	UniProt	VAR_030638	M	369	V	ATS4_HUMAN	Polymorphism	17855812	C	M	369	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (2, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_030637	D	304	N	ATS4_HUMAN	Polymorphism	17855813	D	D	304	N
2	UniProt	VAR_030638	M	369	V	ATS4_HUMAN	Polymorphism	17855812	D	M	369	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADAM_MEPRO	PS50215	ADAM type metalloprotease domain profile.	ATS4_HUMAN	218-428	4	A:218-428 B:218-428 C:218-428 D:218-428
2	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	ATS4_HUMAN	358-367	4	A:358-367 B:358-367 C:358-367 D:358-367

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADAM_MEPRO	PS50215	ADAM type metalloprotease domain profile.	ATS4_HUMAN	218-428	1	A:218-428 - - -
2	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	ATS4_HUMAN	358-367	1	A:358-367 - - -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADAM_MEPRO	PS50215	ADAM type metalloprotease domain profile.	ATS4_HUMAN	218-428	1	- B:218-428 - -
2	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	ATS4_HUMAN	358-367	1	- B:358-367 - -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADAM_MEPRO	PS50215	ADAM type metalloprotease domain profile.	ATS4_HUMAN	218-428	1	- - C:218-428 -
2	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	ATS4_HUMAN	358-367	1	- - C:358-367 -

Biological Unit 4 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADAM_MEPRO	PS50215	ADAM type metalloprotease domain profile.	ATS4_HUMAN	218-428	1	- - - D:218-428
2	ZINC_PROTEASE	PS00142	Neutral zinc metallopeptidases, zinc-binding region signature.	ATS4_HUMAN	358-367	1	- - - D:358-367

Asymmetric Unit (4, 16)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000367996	1a	ENSE00001860852	chr1:161168846-161167785	1062	ATS4_HUMAN	1-211	211	0	-	-
1.2a	ENST00000367996	2a	ENSE00001041589	chr1:161166670-161166347	324	ATS4_HUMAN	212-319	108	4	A:214-319 (gaps) B:214-319 (gaps) C:215-319 (gaps) D:215-319 (gaps)	106 106 105 105
1.2c	ENST00000367996	2c	ENSE00001041604	chr1:161166093-161165961	133	ATS4_HUMAN	320-364	45	4	A:320-364 B:320-364 C:320-364 D:320-364	45 45 45 45
1.3b	ENST00000367996	3b	ENSE00001288666	chr1:161165425-161165255	171	ATS4_HUMAN	364-421	58	4	A:364-421 B:364-421 C:364-421 D:364-421 (gaps)	58 58 58 58
1.4b	ENST00000367996	4b	ENSE00001041601	chr1:161164011-161163725	287	ATS4_HUMAN	421-516	96	4	A:421-508 B:421-508 (gaps) C:421-508 D:421-506 (gaps)	88 88 88 86
1.5	ENST00000367996	5	ENSE00001041571	chr1:161163616-161163430	187	ATS4_HUMAN	517-579	63	0	-	-
1.6	ENST00000367996	6	ENSE00001041575	chr1:161163178-161163003	176	ATS4_HUMAN	579-637	59	0	-	-
1.7	ENST00000367996	7	ENSE00001041585	chr1:161162030-161161855	176	ATS4_HUMAN	638-696	59	0	-	-
1.8	ENST00000367996	8	ENSE00001446083	chr1:161161354-161159538	1817	ATS4_HUMAN	696-837	142	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:291
 aligned with ATS4_HUMAN | O75173 from UniProtKB/Swiss-Prot  Length:837

    Alignment length:295
                                   223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503     
           ATS4_HUMAN   214 ASLSRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVILGSGEEGPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADVGTVCDPARSCAIVEDDGLQSAFTAAHELGHVFNMLHDNSKPCISLNGPLSTSRHVMAPVMAHVDPEEPWSPCSARFITDFLDNGYGHCLLDKPEAPLHLPVTFPGKDYDADRQCQLTFGPDSRHCPQLPPPCAALWCSGHLNGHAMCQTKHSPWADGTPCGPAQACMGGRCLH 508
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.----.......hhhhhhhhhhhhhh..............eeeeee.............eee...........eeeee....hhhhhhhhhhhhhh......hhhhhhhhh......................hhhhhhhhhhhhhh..hhhhh............hhhhhhhhhhhhhhhhh.................eeeee..eeeee..........eee..eeee..eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------N----------------------------------------------------------------V------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----ADAM_MEPRO  PDB: A:218-428 UniProt: 218-428                                                                                                                                                                        -------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------ZINC_PROTE--------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.2a  PDB: A:214-319 (gaps) UniProt: 212-319 [INCOMPLETE]                                            Exon 1.2c  PDB: A:320-364 UniProt: 320-364   --------------------------------------------------------Exon 1.4b  PDB: A:421-508 UniProt: 421-516 [INCOMPLETE]                                  Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.3b  PDB: A:364-421 UniProt: 364-421                --------------------------------------------------------------------------------------- Transcript 1 (2)
                 2rjp A 214 ASLSRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVIL----EGPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADVGTVCDPARSCAIVEDDGLQSAFTAAHQLGHVFNMLHDNSKPCISLNGPLSTSRHVMAPVMAHVDPEEPWSPCSARFITDFLDNGYGHCLLDKPEAPLHLPVTFPGKDYDADRQCQLTFGPDSRHCPQLPPPCAALWCSGHLNGHAMCQTKHSPWADGTPCGPAQACMGGRCLH 508
                                   223       233       243       253       263        |-   |   283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503     
                                                                                    272  277

Chain B from PDB  Type:PROTEIN  Length:284
 aligned with ATS4_HUMAN | O75173 from UniProtKB/Swiss-Prot  Length:837

    Alignment length:295
                                   223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503     
           ATS4_HUMAN   214 ASLSRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVILGSGEEGPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADVGTVCDPARSCAIVEDDGLQSAFTAAHELGHVFNMLHDNSKPCISLNGPLSTSRHVMAPVMAHVDPEEPWSPCSARFITDFLDNGYGHCLLDKPEAPLHLPVTFPGKDYDADRQCQLTFGPDSRHCPQLPPPCAALWCSGHLNGHAMCQTKHSPWADGTPCGPAQACMGGRCLH 508
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee...---......hhhhhhhhhhhhhhhhh...........eeeeee.............eee...........eeeee....hhhhhhhhhhhhhh......hhhhhhhhh......................hhhhhhhhhhhhhh..hhhhh............hhhhhhhhhhhhhhhhh.......----.....eeee.----.eeee...............eee..eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------N----------------------------------------------------------------V------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----ADAM_MEPRO  PDB: B:218-428 UniProt: 218-428                                                                                                                                                                        -------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------ZINC_PROTE--------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.2a  PDB: B:214-319 (gaps) UniProt: 212-319 [INCOMPLETE]                                            Exon 1.2c  PDB: B:320-364 UniProt: 320-364   --------------------------------------------------------Exon 1.4b  PDB: B:421-508 (gaps) UniProt: 421-516 [INCOMPLETE]                           Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.3b  PDB: B:364-421 UniProt: 364-421                --------------------------------------------------------------------------------------- Transcript 1 (2)
                 2rjp B 214 ASLSRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVILGS---GPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADVGTVCDPARSCAIVEDDGLQSAFTAAHQLGHVFNMLHDNSKPCISLNGPLSTSRHVMAPVMAHVDPEEPWSPCSARFITDFLDNGYGHCLLDKPEAPLHLPVTFPGKDYDADRQCQLTFGPDSRHCP----PCAALWCSGH----AMCQTKHSPWADGTPCGPAQACMGGRCLH 508
                                   223       233       243       253       263       273|   |  283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       | -  |    473 |    |483       493       503     
                                                                                      274 278                                                                                                                                                                                    461  466      475  480

Chain C from PDB  Type:PROTEIN  Length:290
 aligned with ATS4_HUMAN | O75173 from UniProtKB/Swiss-Prot  Length:837

    Alignment length:294
                                   224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504    
           ATS4_HUMAN   215 SLSRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVILGSGEEGPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADVGTVCDPARSCAIVEDDGLQSAFTAAHELGHVFNMLHDNSKPCISLNGPLSTSRHVMAPVMAHVDPEEPWSPCSARFITDFLDNGYGHCLLDKPEAPLHLPVTFPGKDYDADRQCQLTFGPDSRHCPQLPPPCAALWCSGHLNGHAMCQTKHSPWADGTPCGPAQACMGGRCLH 508
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.----.......hhhhhhhhhhhhhhhhh...........eeeeee.............ee............eeeee....hhhhhhhhhhhhhh......hhhhhhhhh......................hhhhhhhhhhhhhh..hhhhh............hhhhhhhhhhhhhhhhh................eeeeee..eeeeee.........eee..eeee..eee. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------N----------------------------------------------------------------V------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---ADAM_MEPRO  PDB: C:218-428 UniProt: 218-428                                                                                                                                                                        -------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------ZINC_PROTE--------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.2a  PDB: C:215-319 (gaps) UniProt: 212-319 [INCOMPLETE]                                           Exon 1.2c  PDB: C:320-364 UniProt: 320-364   --------------------------------------------------------Exon 1.4b  PDB: C:421-508 UniProt: 421-516 [INCOMPLETE]                                  Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.3b  PDB: C:364-421 UniProt: 364-421                --------------------------------------------------------------------------------------- Transcript 1 (2)
                 2rjp C 215 SLSRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVIL----EGPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADVGTVCDPARSCAIVEDDGLQSAFTAAHQLGHVFNMLHDNSKPCISLNGPLSTSRHVMAPVMAHVDPEEPWSPCSARFITDFLDNGYGHCLLDKPEAPLHLPVTFPGKDYDADRQCQLTFGPDSRHCPQLPPPCAALWCSGHLNGHAMCQTKHSPWADGTPCGPAQACMGGRCLH 508
                                   224       234       244       254       264       | -  |    284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504    
                                                                                   272  277

Chain D from PDB  Type:PROTEIN  Length:278
 aligned with ATS4_HUMAN | O75173 from UniProtKB/Swiss-Prot  Length:837

    Alignment length:292
                                   224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504  
           ATS4_HUMAN   215 SLSRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVILGSGEEGPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADVGTVCDPARSCAIVEDDGLQSAFTAAHELGHVFNMLHDNSKPCISLNGPLSTSRHVMAPVMAHVDPEEPWSPCSARFITDFLDNGYGHCLLDKPEAPLHLPVTFPGKDYDADRQCQLTFGPDSRHCPQLPPPCAALWCSGHLNGHAMCQTKHSPWADGTPCGPAQACMGGRC 506
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---Reprolysin-2rjpD01 D:218-428                                                                                                                                                                                       ---------------------------------    ----------------------------------------- Pfam domains (1)
           Pfam domains (2) ---Reprolysin-2rjpD02 D:218-428                                                                                                                                                                                       ---------------------------------    ----------------------------------------- Pfam domains (2)
           Pfam domains (3) ---Reprolysin-2rjpD03 D:218-428                                                                                                                                                                                       ---------------------------------    ----------------------------------------- Pfam domains (3)
           Pfam domains (4) ---Reprolysin-2rjpD04 D:218-428                                                                                                                                                                                       ---------------------------------    ----------------------------------------- Pfam domains (4)
         Sec.struct. author ...eeeeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.-----......hhhhhhhhhhhhhhhhh...........eeeeee.............ee............eeeee....hhhhhhhhhhhhhh......hhhhhhhh-----..................hhhhhhhhhhhhhh..hhhhh............hhhhhhhhhhhhhhhhh.......----......eeeee..eeeee....................... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------N----------------------------------------------------------------V----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---ADAM_MEPRO  PDB: D:218-428 UniProt: 218-428                                                                                                                                                                        ------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------ZINC_PROTE------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.2a  PDB: D:215-319 (gaps) UniProt: 212-319 [INCOMPLETE]                                           Exon 1.2c  PDB: D:320-364 UniProt: 320-364   --------------------------------------------------------Exon 1.4b  PDB: D:421-506 (gaps) UniProt: 421-516 [INCOMPLETE]                         Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.3b  PDB: D:364-421 (gaps) UniProt: 364-421         ------------------------------------------------------------------------------------- Transcript 1 (2)
                 2rjp D 215 SLSRFVETLVVADDKMAAFHGAGLKRYLLTVMAAAAKAFKHPSIRNPVSLVVTRLVIL-----GPQVGPSAAQTLRSFCAWQRGLNTPEDSDPDHFDTAILFTRQDLCGVSTCDTLGMADVGTVCDPARSCAIVEDDGLQSAFTAAHQLGHVFNMLHDNSKPCISLN-----SRHVMAPVMAHVDPEEPWSPCSARFITDFLDNGYGHCLLDKPEAPLHLPVTFPGKDYDADRQCQLTFGPDSRHCP----PCAALWCSGHLNGHAMCQTKHSPWADGTPCGPAQACMGGRC 506
                                   224       234       244       254       264       | -   |   284       294       304       314       324       334       344       354       364       374      |  -  |    394       404       414       424       434       444       454      |  - |     474       484       494       504  
                                                                                   272   278                                                                                                    381   387                                                                       461  466

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2RJP)

(no "CATH Domain" information available for 2RJP)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Peptidase_MA (251)

Family: Reprolysin (9)

Homo sapiens (Human) (9)

1a	Reprolysin-2rjpD01	D:218-428
1b	Reprolysin-2rjpD02	D:218-428
1c	Reprolysin-2rjpD03	D:218-428
1d	Reprolysin-2rjpD04	D:218-428

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ATS4_HUMAN | O75173)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004222	metalloendopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008237	metallopeptidase activity	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0002020	protease binding	Interacting selectively and non-covalently with any protease or peptidase.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0022617	extracellular matrix disassembly	A process that results in the breakdown of the extracellular matrix.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0001501	skeletal system development	The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton).
cellular component
	GO:0031012	extracellular matrix	A structure lying external to one or more cells, which provides structural support for cells or tissues.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005578	proteinaceous extracellular matrix	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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	Cis Peptide Bonds
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	ATS4_HUMAN \| O75173	:	3b2z 4wk7 4wke 4wki

2rjq	CRYSTAL STRUCTURE OF ADAMTS5 WITH INHIBITOR BOUND
3b2z	CRYSTAL STRUCTURE OF ADAMTS4 (APO FORM)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 20)

Sites (20, 20)

SS Bonds (30, 30)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 8)

PROSITE Motifs (2, 8)

Exons (4, 16)

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Gene Ontology (15, 15)

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