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(-) Description

Title :  STRUCTURE OF THE ETR1P/NADP/CROTONYL-COA COMPLEX
 
Authors :  N. Quade, B. Voegeli, R. Rosenthal, G. Capitani, T. J. Erb
Date :  31 Aug 14  (Deposition) - 18 Mar 15  (Release) - 27 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (2x)
Keywords :  Mitochondrial Fatty Acid Synthesis, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. G. Rosenthal, B. Vogeli, N. Quade, G. Capitani, P. Kiefer, J. A. Vorholt, M. O. Ebert, T. J. Erb
The Use Of Ene Adducts To Study And Engineer Enoyl-Thioeste Reductases.
Nat. Chem. Biol. V. 11 398 2015
PubMed-ID: 25867044  |  Reference-DOI: 10.1038/NCHEMBIO.1794

(-) Compounds

Molecule 1 - ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADPH, B-SPECIFIC] 1, MITOCHONDRIAL
    Chains: A, B, C
    EC Number: 1.3.1.10, 1.3.1.38
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PT7-7
    Expression System Taxid: 469008
    Gene: ETR1
    Organism Common: YEAST
    Organism Scientific: CANDIDA TROPICALIS
    Organism Taxid: 5482
    Synonym: TRANS-2-ENOYL-COA REDUCTASE 1

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): AB 
Biological Unit 2 (2x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1COO3Ligand/IonCROTONYL COENZYME A
2NAP3Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1COO2Ligand/IonCROTONYL COENZYME A
2NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1COO2Ligand/IonCROTONYL COENZYME A
2NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:69 , VAL A:171 , ASN A:172 , THR A:175 , THR A:199 , SER A:200 , ALA A:201 , VAL A:202 , ARG A:222 , ARG A:224 , VAL A:275 , TYR A:296 , GLY A:297 , MET A:299 , PHE A:321 , TRP A:322 , VAL A:323 , LYS A:381 , COO A:402 , HOH A:521 , HOH A:522 , HOH A:526 , HOH A:583 , HOH A:584 , HOH A:656binding site for residue NAP A 401
2AC2SOFTWARESER A:70 , ASN A:73 , TYR A:79 , GLY A:297 , GLY A:298 , PHE A:301 , VAL A:323 , THR A:324 , NAP A:401 , HOH A:552 , HOH A:595 , HOH A:669 , ARG B:285 , PRO B:307 , THR B:308 , SER B:309 , HOH B:565binding site for residue COO A 402
3AC3SOFTWAREPRO B:69 , VAL B:171 , ASN B:172 , THR B:175 , GLY B:197 , THR B:199 , SER B:200 , ALA B:201 , VAL B:202 , ARG B:222 , ARG B:224 , VAL B:275 , TYR B:296 , GLY B:297 , MET B:299 , PHE B:321 , TRP B:322 , VAL B:323 , LYS B:381 , COO B:402 , HOH B:547 , HOH B:557 , HOH B:567 , HOH B:574 , HOH B:582 , HOH B:598binding site for residue NAP B 401
4AC4SOFTWAREPHE A:313 , PRO B:69 , SER B:70 , ASN B:73 , GLN B:76 , TYR B:79 , VAL B:171 , GLY B:297 , GLY B:298 , MET B:299 , PHE B:301 , NAP B:401 , HOH B:545 , HOH B:583 , HOH B:642binding site for residue COO B 402
5AC5SOFTWAREPRO C:69 , VAL C:171 , ASN C:172 , THR C:175 , THR C:199 , SER C:200 , ALA C:201 , VAL C:202 , ARG C:222 , ARG C:224 , VAL C:275 , TYR C:296 , GLY C:297 , MET C:299 , PHE C:321 , TRP C:322 , VAL C:323 , LYS C:381 , COO C:402 , HOH C:548 , HOH C:563 , HOH C:572 , HOH C:584 , HOH C:628 , HOH C:646binding site for residue NAP C 401
6AC6SOFTWARESER C:70 , ASN C:73 , TYR C:79 , GLY C:297 , GLY C:298 , MET C:299 , THR C:324 , NAP C:401 , HOH C:547 , HOH C:595binding site for residue COO C 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WAS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WAS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WAS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WAS)

(-) Exons   (0, 0)

(no "Exon" information available for 4WAS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:364
                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhheeeeeee........eeeeeeeeeeehhhhhhhhhh..................ee.....eeeeeee...........eeee..........eeeee...eeee.hhhhhhhh......hhhhhhh..hhhhhhhhhhhh.........eeee....hhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhh..eeeehhhhh...hhhhhhhhhhhhh..eeeeee..hhhhhhhhhhh.....eeee........eeehhhhhhhhh.eeee.hhhhhh..hhhhhhhhhhhhhhhhhh........eeee.....hhhhhhhhhhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4was A  23 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY 386
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    


Chain B from PDB  Type:PROTEIN  Length:364
                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhheeeeeee........eeeeeeeeeeehhhhhhhhhh..................ee.....eeeeeee...........eeee..........eeeee...eeee.hhhhhhhh......hhhhhhh..hhhhhhhhhhhh.........eeee....hhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhh...eeeeee..hhhhhhhhhhh.....eeee........eeehhhhhhhhh.eeee.hhhhhhh.hhhhhhhhhhhhhhhhhh........eeee.....hhhhhhhhhhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4was B  23 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY 386
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    


Chain C from PDB  Type:PROTEIN  Length:364
                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhheeeeeeehhhhh...eeeeeeeeeeehhhhhhhhhh..................ee.....eeeeeee...........eeee..........eeeee...eeee.hhhhhhh.......hhhhhhh..hhhhhhhhhhhh.........eeee....hhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhh..eeeehhhhh...hhhhhhhhhhhh...eeeeee..hhhhhhhhhhh.....eeee...........hhhhhhhh..eeee.hhhhhh..hhhhhhhhhhhhhhhhhh........eeee.....hhhhhhhhhhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4was C  23 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY 386
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WAS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WAS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WAS)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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UniProtKB/Swiss-Prot
        ETR1_CANTR | Q8WZM3: 1gu7 1guf 1gyr 1n9g 4w99 5lb9 5lbx

(-) Related Entries Specified in the PDB File

4w99 4W99 IS THE APO STRUCTUE OF THE Y79F, W322E DOUBLE MUTANT OF ETR1P