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(-) Description

Title :  ENOYL THIOESTER REDUCTASE FROM CANDIDA TROPICALIS
 
Authors :  T. T. Airenne, J. M. Torkko, R. K. Wierenga, J. K. Hiltunen
Date :  24 Jan 02  (Deposition) - 13 Mar 03  (Release) - 31 Aug 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Oxidoreductase, Thioester Reduction, Fatty Acids (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. T. Airenne, J. M. Torkko, S. Van Der Plas, R. T. Sormunen, A. J. Kastaniotis, R. K. Wierenga, J. K. Hiltunen
Structure-Function Analysis Of Enoyl Thioester Reductase Involved In Mitochondrial Maintenance
J. Mol. Biol. V. 327 47 2003
PubMed-ID: 12614607  |  Reference-DOI: 10.1016/S0022-2836(03)00038-X

(-) Compounds

Molecule 1 - ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADPH, B-SPECIFIC] 1,MITOCHONDRIAL
    Atcc20336
    ChainsA, B
    EC Number1.3.1.10, 1.3.1.38
    EngineeredYES
    Expression SystemSACCHAROMYCES CEREVISIAE
    Expression System CommonBAKER'S YEAST
    Expression System StrainBJ1991
    Expression System Taxid4932
    Organism ScientificCANDIDA TROPICALIS
    Organism Taxid5482
    StrainPK233
    Synonym2,4-DIENOYL-COA REDUCTAS, 2-ENOYL THIOESTER REDUCTASE, TRANS-2-ENOYL-COA REDUCTASE 1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 22)

Asymmetric/Biological Unit (2, 22)
No.NameCountTypeFull Name
1GOL9Ligand/IonGLYCEROL
2SO413Ligand/IonSULFATE ION

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:197 , GLY A:198 , THR A:199 , ILE A:221 , ARG A:222 , ARG A:224 , HOH A:2230 , HOH A:2428 , HOH A:2429 , HOH A:2430BINDING SITE FOR RESIDUE SO4 A1392
02AC2SOFTWAREARG A:285 , SER A:309 , HOH A:2431BINDING SITE FOR RESIDUE SO4 A1393
03AC3SOFTWAREARG A:285 , HOH A:2432 , HOH A:2433BINDING SITE FOR RESIDUE SO4 A1394
04AC4SOFTWAREGLN A:151 , HOH A:2119 , HOH A:2435 , HOH A:2436 , HOH A:2437 , HOH A:2438 , HOH A:2439 , LYS B:61BINDING SITE FOR RESIDUE SO4 A1395
05AC5SOFTWARESER A:200 , ALA A:201 , LYS A:381 , HOH A:2440 , HOH A:2443BINDING SITE FOR RESIDUE SO4 A1396
06AC6SOFTWAREASN A:68 , PRO A:69 , SER A:70 , HOH A:2053 , HOH A:2444 , HOH A:2445BINDING SITE FOR RESIDUE SO4 A1397
07AC7SOFTWAREGLN A:33 , HIS A:34 , LYS A:85BINDING SITE FOR RESIDUE SO4 A1398
08AC8SOFTWAREGLY B:197 , GLY B:198 , THR B:199 , VAL B:220 , ILE B:221 , ARG B:222 , ARG B:224 , HOH B:2270 , HOH B:2302 , HOH B:2452BINDING SITE FOR RESIDUE SO4 B1391
09AC9SOFTWAREPRO B:69 , ASN B:172 , ALA B:201 , LYS B:381 , HOH B:2251 , HOH B:2444 , HOH B:2454 , HOH B:2455 , HOH B:2456 , HOH B:2457 , HOH B:2458BINDING SITE FOR RESIDUE SO4 B1392
10BC1SOFTWAREGLN B:33 , HIS B:34 , LYS B:85 , HOH B:2459BINDING SITE FOR RESIDUE SO4 B1393
11BC2SOFTWARETHR B:162 , ILE B:163 , HOH B:2408 , HOH B:2461 , HOH B:2463BINDING SITE FOR RESIDUE SO4 B1394
12BC3SOFTWAREHIS B:182 , LEU B:326 , HOH B:2367 , HOH B:2464BINDING SITE FOR RESIDUE SO4 B1395
13BC4SOFTWAREARG B:285 , SER B:309 , HOH B:2465BINDING SITE FOR RESIDUE SO4 B1396
14BC5SOFTWAREPHE A:321 , TRP A:322 , GLU A:325 , HOH A:2209 , HOH A:2418 , TYR B:311 , ILE B:312 , ASN B:315 , HOH B:2346BINDING SITE FOR RESIDUE GOL A1387
15BC6SOFTWAREVAL A:127 , SER A:170 , THR A:324 , LEU A:327 , LYS A:334 , HOH A:2419 , HOH A:2420 , HOH A:2421BINDING SITE FOR RESIDUE GOL A1388
16BC7SOFTWAREGLU A:267 , LEU A:287 , ASN A:288 , ASN A:289 , LYS A:314 , HOH A:2422BINDING SITE FOR RESIDUE GOL A1389
17BC8SOFTWAREHIS A:182 , LEU A:326 , ASN A:330 , HOH A:2423 , HOH A:2424BINDING SITE FOR RESIDUE GOL A1390
18BC9SOFTWARELYS A:204 , ALA A:353 , LYS A:354 , HOH A:2425 , HOH A:2426 , HOH A:2427BINDING SITE FOR RESIDUE GOL A1391
19CC1SOFTWARETYR A:311 , ILE A:312 , ASN A:315 , HOH A:2323 , GLY B:320 , PHE B:321 , TRP B:322 , GLU B:325 , HOH B:2238 , HOH B:2450BINDING SITE FOR RESIDUE GOL B1387
20CC2SOFTWARETHR B:32 , THR B:91 , THR B:92 , GLU B:93BINDING SITE FOR RESIDUE GOL B1388
21CC3SOFTWAREASN B:100 , PRO B:124 , SER B:125 , HIS B:126 , SER B:170 , LYS B:334 , HOH B:2226 , HOH B:2451BINDING SITE FOR RESIDUE GOL B1389
22CC4SOFTWAREGLU B:267 , ASN B:288 , ASN B:289 , LYS B:314 , HOH B:2317BINDING SITE FOR RESIDUE GOL B1390

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GU7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1GU7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GU7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1GU7)

(-) Exons   (0, 0)

(no "Exon" information available for 1GU7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:364
 aligned with ETR1_CANTR | Q8WZM3 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:364
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    
           ETR1_CANTR    23 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY 386
               SCOP domains d1gu7a1 A:23-160,A:350-386 2,4-dienoyl-CoA reductase                                                                                      d1gu7a2 A:161-349 2,4-dienoyl-CoA reductase                                                                                                                                                  d1gu7a1 A:23-160,A:350-386            SCOP domains
               CATH domains 1gu7A01 A:23-169,A:355-386 Medium-chain alcohol dehydrogenases, catalytic domain                                                                   1gu7A02 A:170-350 NAD(P)-binding Rossmann-like Domain                                                                                                                                ----1gu7A01 A:23-169,A:355-386       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhheeeeeee........eeeeeeeeeeehhhhhhhhhh..................ee.....eeeeeee...........eeee..........eeeee...eeee.hhhhhhhh......hhhhhhh..hhhhhhhhhhhh.........eeee....hhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh..eeeeee..hhhhhhhhhhh.....eeee........eeehhhhhhhh..eeee.hhhhhhh.hhhhhhhhhhhhhhhhhh........eeee.....hhhhhhhhhhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gu7 A  23 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY 386
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    

Chain B from PDB  Type:PROTEIN  Length:364
 aligned with ETR1_CANTR | Q8WZM3 from UniProtKB/Swiss-Prot  Length:386

    Alignment length:364
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    
           ETR1_CANTR    23 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY 386
               SCOP domains d1gu7b1 B:23-160,B:350-386 2,4-dienoyl-CoA reductase                                                                                      d1gu7b2 B:161-349 2,4-dienoyl-CoA reductase                                                                                                                                                  d1gu7b1 B:23-160,B:350-386            SCOP domains
               CATH domains 1gu7B01 B:23-169,B:355-386 Medium-chain alcohol dehydrogenases, catalytic domain                                                                   1gu7B02 B:170-350 NAD(P)-binding Rossmann-like Domain                                                                                                                                ----1gu7B01 B:23-169,B:355-386       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhheeeeeee........eeeeeeeeeeehhhhhhhhhh..................ee.....eeeeeee...........eeee..........eeeee...eeee.hhhhhhhh......hhhhhhh..hhhhhhhhhhhh.........eeee....hhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh..eeeeee..hhhhhhhhhhh.....eeee........eeehhhhhhhh..eeee.hhhhhh..hhhhhhhhhhhhhhhhhh........eeee.....hhhhhhhhhhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gu7 B  23 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY 386
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GU7)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (ETR1_CANTR | Q8WZM3)
molecular function
    GO:0004319    enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity    Catalysis of the reaction: acyl-[acyl-carrier protein] + NADP+ = trans-2,3-dehydroacyl-[acyl-carrier protein] + NADPH + H+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0019166    trans-2-enoyl-CoA reductase (NADPH) activity    Catalysis of the reaction: acyl-CoA + NADP+ = trans-2,3-dehydroacyl-CoA + NADPH + H+.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006633    fatty acid biosynthetic process    The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
    GO:0006631    fatty acid metabolic process    The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ETR1_CANTR | Q8WZM31guf 1gyr 1n9g 4w99 4was 5lb9 5lbx

(-) Related Entries Specified in the PDB File

1guf ENOYL THIOESTER REDUCTASE FROM CANDIDA TROPICALIS
1gyr MUTANT FORM OF ENOYL THIOESTER REDUCTASE FROM CANDIDA TROPICALIS