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(-) Description

Title :  APO-STRUCTURE OF THE Y79F,W322E-DOUBLE MUTANT OF ETR1P
 
Authors :  N. Quade, B. Voegeli, R. Rosenthal, T. J. Erb
Date :  27 Aug 14  (Deposition) - 18 Mar 15  (Release) - 27 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Reductase, Mitochondrial Fatty Acid Synthesis, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. G. Rosenthal, B. Vogeli, N. Quade, G. Capitani, P. Kiefer, J. A. Vorholt, M. O. Ebert, T. J. Erb
The Use Of Ene Adducts To Study And Engineer Enoyl-Thioeste Reductases.
Nat. Chem. Biol. V. 11 398 2015
PubMed-ID: 25867044  |  Reference-DOI: 10.1038/NCHEMBIO.1794

(-) Compounds

Molecule 1 - ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADPH, B-SPECIFIC] 1, MITOCHONDRIAL
    Chains: A, B
    EC Number: 1.3.1.10, 1.3.1.38
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PT7-7
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 23-386
    Gene: ETR1
    Mutation: YES
    Organism Common: YEAST
    Organism Scientific: CANDIDA TROPICALIS
    Organism Taxid: 5482
    Synonym: TRANS-2-ENOYL-COA REDUCTASE 1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric/Biological Unit (2, 10)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2SO47Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:204 , ALA A:353 , LYS A:354 , HOH A:786 , HOH A:787 , HOH A:788binding site for residue GOL A 401
02AC2SOFTWAREGLY A:197 , GLY A:198 , THR A:199 , ILE A:221 , ARG A:222 , ARG A:224 , HOH A:672 , HOH A:789 , HOH A:790 , HOH A:791binding site for residue SO4 A 402
03AC3SOFTWAREARG A:285 , SER A:309 , HOH A:792binding site for residue SO4 A 403
04AC4SOFTWARETHR A:281 , ARG A:285 , HOH A:793binding site for residue SO4 A 404
05AC5SOFTWAREGLN A:151 , HOH A:501 , HOH A:509 , HOH A:541 , HOH A:604 , HOH A:794 , LYS B:61binding site for residue SO4 A 405
06AC6SOFTWARETYR A:183 , GLY A:320 , PHE A:321 , GLU A:322 , HOH A:659 , TYR B:311 , ILE B:312 , ASN B:315 , HOH B:574binding site for residue GOL B 401
07AC7SOFTWARETHR B:32 , THR B:91 , THR B:92 , GLU B:93binding site for residue GOL B 402
08AC8SOFTWAREGLY B:197 , GLY B:198 , THR B:199 , ILE B:221 , ARG B:222 , ARG B:224 , HOH B:789 , HOH B:815 , HOH B:937 , HOH B:938binding site for residue SO4 B 403
09AC9SOFTWAREGLN B:33 , HIS B:34 , LYS B:85 , HOH B:944binding site for residue SO4 B 404
10AD1SOFTWAREARG B:285 , SER B:309 , HOH B:949binding site for residue SO4 B 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4W99)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4W99)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4W99)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4W99)

(-) Exons   (0, 0)

(no "Exon" information available for 4W99)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:364
                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhheeeeeee........eeeeeeeeeeehhhhhhhhhh..................ee.....eeeeeee...........eeee..........eeeee...eeee.hhhhhhhh......hhhhhhh..hhhhhhhhhhhh.........eeee....hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh..eeeeee..hhhhhhhhhhh.....eeee........eeehhhhhhhhh.eeee.hhhhhhh.hhhhhhhhhhhhhhhhhh........eeee.....hhhhhhhhhhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w99 A  23 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVFPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFEVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY 386
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    


Chain B from PDB  Type:PROTEIN  Length:364
                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....hhhhhheeeeeee........eeeeeeeeeeehhhhhhhhhh..................ee.....eeeeeee...........eeee..........eeeee...eeee.hhhhhhhh......hhhhhhh..hhhhhhhhhhhh.........eeee....hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh..eeeeee..hhhhhhhhhhh.....eeee........eeehhhhhhhh..eeee.hhhhhhh.hhhhhhhhhhhhhhhhhh........eeee.....hhhhhhhhhhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w99 B  23 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVFPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFEVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY 386
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W99)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W99)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W99)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  4w99
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ETR1_CANTR | Q8WZM3: 1gu7 1guf 1gyr 1n9g 4was 5lb9 5lbx

(-) Related Entries Specified in the PDB File

1n9g 1N9G IS THE APO STRUCTURE OF WT ETR1P