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(-) Description

Title :  CRYSTAL STRUCTURE OF ROCK 1 BOUND TO YB-15-QD37
 
Authors :  E. R. Sprague
Date :  22 Aug 14  (Deposition) - 15 Oct 14  (Release) - 29 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A,B,C,D  (1x)
Keywords :  Inhibitor, Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Shaw, G. Hollingworth, N. Soldermann, E. Sprague, W. Schuler, E. Vangrevelinghe, N. Duggan, M. Thomas, T. Kosaka, N. Waters, M. J. Van Eis
Novel Rock Inhibitors For The Treatment Of Pulmonary Arterial Hypertension.
Bioorg. Med. Chem. Lett. V. 24 4812 2014
PubMed-ID: 25248678  |  Reference-DOI: 10.1016/J.BMCL.2014.09.002

(-) Compounds

Molecule 1 - RHO-ASSOCIATED PROTEIN KINASE 1
    Chains: A, B, C, D
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Gene: ROCK1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RENAL CARCINOMA ANTIGEN NY-REN-35,RHO-ASSOCIATED,COILED- COIL-CONTAINING PROTEIN KINASE 1,COILED-COIL-CONTAINING PROTEIN KINASE I,ROCK-I,P160 ROCK-1,P160ROCK

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD
Biological Unit 3 (1x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
13J74Ligand/IonN~1~-[2-(1H-INDAZOL-5-YL)PYRIDO[3,4-D]PYRIMIDIN-4-YL]-2-METHYLPROPANE-1,2-DIAMINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
13J72Ligand/IonN~1~-[2-(1H-INDAZOL-5-YL)PYRIDO[3,4-D]PYRIMIDIN-4-YL]-2-METHYLPROPANE-1,2-DIAMINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
13J72Ligand/IonN~1~-[2-(1H-INDAZOL-5-YL)PYRIDO[3,4-D]PYRIMIDIN-4-YL]-2-METHYLPROPANE-1,2-DIAMINE
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
13J74Ligand/IonN~1~-[2-(1H-INDAZOL-5-YL)PYRIDO[3,4-D]PYRIMIDIN-4-YL]-2-METHYLPROPANE-1,2-DIAMINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:82 , VAL A:90 , ALA A:103 , LYS A:105 , VAL A:137 , GLU A:154 , TYR A:155 , MET A:156 , ASP A:160 , ASP A:202 , LEU A:205 , ASP A:216 , PHE A:368binding site for residue 3J7 A 501
2AC2SOFTWAREILE B:82 , VAL B:90 , ALA B:103 , LYS B:105 , GLU B:154 , TYR B:155 , MET B:156 , ASP B:160 , ASP B:202 , ASP B:216 , PHE B:368binding site for residue 3J7 B 501
3AC3SOFTWAREVAL C:90 , ALA C:103 , LYS C:105 , VAL C:137 , GLU C:154 , TYR C:155 , MET C:156 , ASP C:160 , ASP C:202 , ASP C:216 , PHE C:368binding site for residue 3J7 C 501
4AC4SOFTWAREVAL D:90 , ALA D:103 , LYS D:105 , VAL D:137 , GLU D:154 , TYR D:155 , MET D:156 , ASP D:160 , ASP D:202 , LEU D:205 , ASP D:216binding site for residue 3J7 D 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4W7P)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4W7P)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4W7P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4W7P)

(-) Exons   (0, 0)

(no "Exon" information available for 4W7P)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeeee....eeeeeee.....eeeeeeeehhhhhh...hhhhhhhhhhh.......eeeeee...eeeeee.....eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee........eee.....eee......ee.....eee...........hhhhhh...eeehhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh........hhhhhhhhhhhh.hhhhh.....hhhhhhhhhhh....hhhhhhhh.................................hhhhh...ee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w7p A   6 SFETRFEKMDNLLRDPKSEVNSDCLLDGLDALVYDLDFPALRKNKNIDNFLSRYKDTINKIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQWAWETLRDTVAPVVPDLSSDIDTSNFDDLEETFPIPKAFVGNQLPFVGFTYYSNRRY 405
                                    15        25        35        45        55        65        75        85        95       105       115||     128       138       148       158       168       178       188       198       208       218       228       238       248|      261       271       281       291       301       311       321       331       341       351       361       371||     387       397        
                                                                                                                                        116|                                                                                                                             248|                                                                                                                     372|                          
                                                                                                                                         120                                                                                                                              252                                                                                                                      379                          


Chain B from PDB  Type:PROTEIN  Length:387
                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeeee....eeeeeee.....eeeeeeeehhhhhh...hhhhhhhhhhh.......eeeeee...eeeeee.....eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.....eee...........hhhhhh...eeehhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh........hhhhhhhhhhhh...........hhhhhhhhhhh.......hhhhh....................................hhhhh...ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w7p B   6 SFETRFEKMDNLLRDPKSEVNSDCLLDGLDALVYDLDFPALRKNKNIDNFLSRYKDTINKIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQWAWETLRDTVAPVVPDLSSDIDTSNFDDLEEEEETFPIPKAFVGNQLPFVGFTYYS 401
                                    15        25        35        45        55        65        75        85        95       105       115||     128       138       148       158       168       178       188       198       208       218       228       238       248|      261       271       281       291       301       311       321       331       341       351       361       371 ||    384       394       
                                                                                                                                        116|                                                                                                                             248|                                                                                                                      373|                        
                                                                                                                                         120                                                                                                                              252                                                                                                                       377                        


Chain C from PDB  Type:PROTEIN  Length:383
                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeeee....eeeeeee.....eeeeeeeehhhhhhhh.hhhhhhhhhhh.......eeeeee...eeeeee.....eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.....eee...........hhhhhh..eeehhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh........hhhhhhhhhhhh...........hhhhhhhhhhh.......hhhhh.................................hhhhh...ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w7p C   6 SFETRFEKMDNLLRDPKSEVNSDCLLDGLDALVYDLDFPALRKNKNIDNFLSRYKDTINKIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQWAWETLRDTVAPVVPDLSSDIDTSNFDDLEETFPIPKAFVGNQLPFVGFTYYS 401
                                    15        25        35        45        55        65        75        85        95       105       115||     128       138       148       158       168       178       188       198       208       218       228       238       248|      262       272       282       292       302       312       322       332       342       352       362       372|      388       398   
                                                                                                                                        116|                                                                                                                             248|                                                                                                                    372|                      
                                                                                                                                         120                                                                                                                              253                                                                                                                     379                      


Chain D from PDB  Type:PROTEIN  Length:387
                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeeee....eeeeeee.....eeeeeeeehhhhh....hhhhhhhhhhh.......eeeeee...eeeeee.....eehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.....eee...........hhhhhhh..eeehhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh........hhhhhhhhhhhh...........hhhhhhhhhhh....hhhhhhhh..................................hhhhh...ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w7p D   6 SFETRFEKMDNLLRDPKSEVNSDCLLDGLDALVYDLDFPALRKNKNIDNFLSRYKDTINKIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQWAWETLRDTVAPVVPDLSSDIDTSNFDDLEEETFPIPKAFVGNQLPFVGFTYYSNR 403
                                    15        25        35        45        55        65        75        85        95       105       115||     128       138       148       158       168       178       188       198       208       218       228       238       248|      261       271       281       291       301       311       321       331       341       351       361       371||     386       396       
                                                                                                                                        116|                                                                                                                             248|                                                                                                                     372|                         
                                                                                                                                         120                                                                                                                              252                                                                                                                      378
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W7P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W7P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W7P)

(-) Gene Ontology  (59, 59)

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  4w7p
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  ROCK1_HUMAN | Q13464
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ROCK1_HUMAN | Q13464: 1s1c 2esm 2etk 2etr 2v55 3d9v 3ncz 3ndm 3o0z 3tv7 3twj 3v8s 4l2w 4yvc 4yve 5bml 5f5p 5hvu 5kks 5kkt

(-) Related Entries Specified in the PDB File

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