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(-) Description

Title :  CO-COMPLEX STRUCTURE OF THE LECTIN DOMAIN OF F18 FIMBRIAL ADHESIN FEDF WITH INHIBITORY NANOBODY NBFEDF9
 
Authors :  K. Moonens, M. De Kerpel, A. Coddens, E. Cox, E. Pardon, H. Remaut, H. De
Date :  21 Aug 14  (Deposition) - 17 Dec 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.57
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Adhesin, Fimbriae, Cell Adhesion, Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Moonens, M. De Kerpel, A. Coddens, E. Cox, E. Pardon, H. Remaut, H. De Greve
Nanobody Mediated Inhibition Of Attachment Of F18 Fimbriae Expressing Escherichia Coli.
Plos One V. 9 14691 2014
PubMed-ID: 25502211  |  Reference-DOI: 10.1371/JOURNAL.PONE.0114691

(-) Compounds

Molecule 1 - F18 FIMBRIAL ADHESIN AC
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST14
    Expression System Strain: C43(DE3)
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 35-185
    Gene: FEDF
    Organism Scientific: ESCHERICHIA COLI DH5[ALPHA]
    Organism Taxid: 668369
    Synonym: FEDF, LECTIN DOMAIN OF F18 FIMBRIAL ADHESIN FEDF
 
Molecule 2 - NANOBODY NBFEDF9
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDESTR4-R3
    Expression System Strain: WK6
    Expression System Taxid: 562
    Organism Common: LLAMA
    Organism Scientific: LAMA GLAMA
    Organism Taxid: 9844

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1SO48Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:79 , ALA A:80 , HOH A:347 , HOH A:390 , HOH A:409 , HOH A:416 , ARG B:54binding site for residue SO4 A 201
2AC2SOFTWARESER A:58 , THR A:62 , SER A:146 , HOH A:309 , HOH A:339 , HOH A:378binding site for residue SO4 A 202
3AC3SOFTWAREARG B:72 , ASP B:73 , ASN B:74 , ALA B:75binding site for residue SO4 B 201
4AC4SOFTWAREGLN A:45 , TYR B:59 , ARG B:108 , VAL B:111 , ARG B:112 , HOH B:339 , HOH B:363binding site for residue SO4 B 202

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:63 -A:83
2A:111 -A:116
3B:22 -B:96
4B:33 -B:109

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4W6Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhheeehhhhh.eeeeeeeeee..eeeeeeeeeee.....eeeeeee.eeeeee..eeeeee.eeeeeeee....eee.....eeeeee..ee..ee..eeeeeeeee.hhhhh...ee...eeeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6y A  16 SSASSAQVTGTLLGTGKTNTTQMPALYTWQHQIYNVNFIPSSSGTLTCQAGTILVWKNGRETQYALECRVSIHHSSGSINESQWGQQSQVGFGTACGNKKCRFTGFEISLRIPPNAQTYPLSSGDLKGSFSLTNKEVNWSASIYVP 161
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155      


Chain B from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eeee....eeeeeeee.......eeeeeee......eeeeeee....eeee.......eeeeee....eeeeee...hhhhheeeeeee.............hhhhh.ee...eeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6y B   1 QVQLQESGGGSVQAGGSLRLSCAASGYTYSSNCMAWFRQVPGKEREGVASINTRGGITYYADSVKGRFTISRDNAKNTVSLQMNSLKPEDTATYYCAAVREATYSDNRCSVRSYTYDYWGQGTQVTVS 128
                                    10        20        30        40        50        60        70        80        90       100       110       120
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W6Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W6Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W6Y)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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 Related Entries

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UniProtKB/TrEMBL
        Q47212_ECOLX | Q47212: 4b4p 4b4q 4b4r 4bwo 4w6w 4w6x

(-) Related Entries Specified in the PDB File

4b4p 4B4P CONTAINS THE APO FORM OF THE LECTIN DOMAIN OF F18 FIMBRIAL ADHESIN FEDF
4w6w
4w6x