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(-) Description

Title :  CO-COMPLEX STRUCTURE OF THE LECTIN DOMAIN OF F18 FIMBRIAL ADHESIN FEDF WITH INHIBITORY NANOBODY NBFEDF6
 
Authors :  K. Moonens, M. De Kerpel, C. Annelies, E. Cox, E. Pardon, H. Remaut, H. D
Date :  21 Aug 14  (Deposition) - 17 Dec 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.51
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cell Adhesion, Adhesin, Inhibitor, Fimbriae (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Moonens, M. De Kerpel, A. Coddens, E. Cox, E. Pardon, H. Remaut, H. De Greve
Nanobody Mediated Inhibition Of Attachment Of F18 Fimbriae Expressing Escherichia Coli.
Plos One V. 9 14691 2014
PubMed-ID: 25502211  |  Reference-DOI: 10.1371/JOURNAL.PONE.0114691

(-) Compounds

Molecule 1 - F18 FIMBRIAL ADHESIN AC
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST14
    Expression System Strain: C43(DE3)
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 35-185
    Gene: FEDF
    Organism Scientific: ESCHERICHIA COLI DH5[ALPHA]
    Organism Taxid: 668369
    Synonym: FEDF
 
Molecule 2 - NBFEDF6
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDESTR4-R3
    Expression System Strain: DH5A
    Expression System Taxid: 562
    Organism Common: LLAMA
    Organism Scientific: LAMA GLAMA
    Organism Taxid: 9844

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4W6W)

(-) Sites  (0, 0)

(no "Site" information available for 4W6W)

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:63 -A:83
2A:111 -A:116
3B:822 -B:895
4B:850 -B:906

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4W6W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4W6W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4W6W)

(-) Exons   (0, 0)

(no "Exon" information available for 4W6W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeehhhhh.eeeeeeeeee..eeeeeeeeeee.....eeeeeee.eeeee....eeeee.eeeeeeee....eee.....eeeeee..........eeeeeeeee.hhhhhh......eeeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6w A  20 SAQVTGTLLGTGKTNTTQMPALYTWQHQIYNVNFIPSSSGTLTCQAGTILVWKNGRETQYALECRVSIHHSSGSINESQWGQQSQVGFGTACGNKKCRFTGFEISLRIPPNAQTYPLSGDLKGSFSLTNKEVNWSASIYVP 161
                                    29        39        49        59        69        79        89        99       109       119       129       140       150       160 
                                                                                                                                               137|                      
                                                                                                                                                139                      


Chain B from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeee....eeeeeee.......eeeeeeee......eeeeee.....eee.......eeeeee.....eeeee...hhhhheeeeeeeee..hhhhhhhhhhh.ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6w B 802 VQLQESGGGSVQAGGSLRLSCAASGYTSGRDSMGWFRQAPGKEREGVACIDTSGIVNYADSVKGRFTISQDSAKKTLYLEMNSLKPEDTALYSCATGPFVYGRGCLGQAFYSYWGQGTQVTVSS 925
                                   811       821       831       841       851       861       871       881       891       901       911       921
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W6W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W6W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W6W)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q47212_ECOLX | Q47212: 4b4p 4b4q 4b4r 4bwo 4w6x 4w6y

(-) Related Entries Specified in the PDB File

4b4p 4B4P CONTAINS THE APO FEDF LECTIN DOMAIN
4w6x
4w6y