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(-) Description

Title :  CO-COMPLEX STRUCTURE OF THE LECTIN DOMAIN OF F18 FIMBRIAL ADHESIN FEDF WITH INHIBITORY NANOBODY NBFEDF7
 
Authors :  K. Moonens, M. De Kerpel, A. Coddens, E. Cox, E. Pardon, H. Remaut, H. De
Date :  21 Aug 14  (Deposition) - 17 Dec 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Lectin, Fimbriae, Cell Adhesion, Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Moonens, M. De Kerpel, A. Coddens, E. Cox, E. Pardon, H. Remaut, H. De Greve
Nanobody Mediated Inhibition Of Attachment Of F18 Fimbriae Expressing Escherichia Coli.
Plos One V. 9 14691 2014
PubMed-ID: 25502211  |  Reference-DOI: 10.1371/JOURNAL.PONE.0114691

(-) Compounds

Molecule 1 - F18 FIMBRIAL ADHESIN AC
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST14
    Expression System Strain: C43(DE3)
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 35-185
    Gene: FEDF
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: FEDF
 
Molecule 2 - NANOBODY NBFEDF7
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDESTR4-R3
    Expression System Strain: WK6
    Expression System Taxid: 562
    Organism Common: LLAMA
    Organism Scientific: LAMA GLAMA
    Organism Taxid: 9844

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4W6X)

(-) Sites  (0, 0)

(no "Site" information available for 4W6X)

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:63 -A:83
2A:111 -A:116
3B:22 -B:96
4B:50 -B:104

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4W6X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4W6X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4W6X)

(-) Exons   (0, 0)

(no "Exon" information available for 4W6X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhh.eeeeeee.....eeeeeeeeeee.....eeeeeee.eeeeee..eeeeee.eeeeeeee....eee.....eeeeee..ee..ee..eeeeeeeee.hhhhh........eeeeeeee....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6x A  20 SAQVTGTLLGTGKTNTTQMPALYTWQHQIYNVNFIPSSSGTLTCQAGTILVWKNGRETQYALECRVSIHHSSGSINESQWGQQSQVGFGTACGNKKCRFTGFEISLRIPPNAQTYPLSSGDLKGSFSLTNKEVNWSASIYVP 161
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159  


Chain B from PDB  Type:PROTEIN  Length:125
                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eeee....eeeeeeee.......eeeeeee......eeeeee.....eee.hhhhh..eeeee.....eeeeee...hhhhheeeeeeee........hhhhh.ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w6x B   1 QVQLQESGGGSVQAGGSLRLSCTASGYTYRKYCMGWFRQAPGKEREGVACINSGGGTSYYADSVKGRFTISQDNAKDTVFLRMNSLKPEDTAIYYCALSSNSVCPPGHVAWYNDWGQGTQVTVSS 125
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W6X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W6X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W6X)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  Q47212_ECOLX | Q47212
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q47212_ECOLX | Q47212: 4b4p 4b4q 4b4r 4bwo 4w6w 4w6y

(-) Related Entries Specified in the PDB File

4b4p 4B4P CONTAINS THE APO FORM OF THE LECTIN DOMAIN OF F18 FIMBRIAL ADHESIN FEDF
4w6w
4w6y